Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1074 ATGTTCCCGGCCGATCCACCTGTCTCAGCCACGGGCACAGGCCTCGGCTATGGCATCGCCATTGCAGTCAGCATTCTCGTCCTCATCTCCACCATCATGCTCGCCTCTTATGCTTGCATCCGAATAAAGGCCAACAGCCGCGGCCTTAACCGCCGAGTTAGCAACAGTAATCGTAGCAGCAGTAACTCCGACCAGCCGGTGGTGGTGGTCTTGGGCCTGGATAAGCCCACGATTGAAGCCTACCCGAAGATTGTTTTAGGGGAGAGCCGGCGATTGCCCAGGCCCAATGGGGGACCATGCGCTATCTGCTTGGGAGAGTATATGAAGAATGATACGGTGCGGTGCGTTCCAGAGTGCAACCACTGTTTCCACGTGGAATGCTTGGATGAGTGGCTTCGTCTGAGTGCCACGTGTCCCATGTGTCGGAACTCTCCAGCTCCGTCGCCGGGGCCGACGCCGGTTGACACTCCTCTGTCAGAATTGGTTCCACTTGCTTCTCACGCAAGGTGA 510 0.5725 MFPADPPVSATGTGLGYGIAIAVSILVLISTIMLASYACIRIKANSRGLNRRVSNSNRSSSNSDQPVVVVLGLDKPTIEAYPKIVLGESRRLPRPNGGPCAICLGEYMKNDTVRCVPECNHCFHVECLDEWLRLSATCPMCRNSPAPSPGPTPVDTPLSELVPLASHAR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1074 169 SMART ring_2 100 141 IPR001841 -
Lele12g1074 169 Pfam Ring finger domain 100 142 IPR001841 -
Lele12g1074 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 147 IPR013083 -
Lele12g1074 169 PANTHER RING-H2 FINGER PROTEIN ATL67 11 168 IPR044289 GO:0016567|GO:0016740
Lele12g1074 169 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Lele12g1074 169 SUPERFAMILY RING/U-box 99 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1074 Lele-ChrLele12 18155290 18155799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1074 1 169 C3H Transcription Factor Family AT5G07040 61.628 3.84e-65 195