Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1070 ATGGAGCTTCCCGAGTGGACAGATATTGTGAAGACTGCAAGATTCAAGGAGCTGGCTCCATATGATCCTGATTGGTACTATGTCAGGGCTGCCTCCATGGCTAGGAAGATCTACTTGAGAGGGGGTCTTGGTGTTGGTTCTTTCCAGAGGATATATGGTGGGAGCCAGAGGAATGGTAGCCGCCCTCCTCATTTCTGCAAGAGCAGTGGCGCTATTGCTCGTAACATTCTTCAACAGTTGCAGAACATGAACATCATTGAAATCGACACCAAGGGGAAGATCACTTCAAATGGTCAGAGGGATCTTGACCAAGTGGCTGGCAGGATTGTGGTGGCCCCTTGA 342 0.4971 MELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARNILQQLQNMNIIEIDTKGKITSNGQRDLDQVAGRIVVAP 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1070 113 Pfam Ribosomal protein S19e 1 110 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele12g1070 113 ProSitePatterns Ribosomal protein S19e signature. 62 81 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lele12g1070 113 PANTHER 40S RIBOSOMAL PROTEIN S19 2 109 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele12g1070 113 SUPERFAMILY "Winged helix" DNA-binding domain 1 111 IPR036390 -
Lele12g1070 113 FunFam 40S ribosomal protein S19 1 113 - -
Lele12g1070 113 SMART Ribosomal_S19e_2 1 112 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele12g1070 113 Gene3D - 1 112 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1070 Lele-ChrLele12 18133333 18134143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1070 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 80.870 7.64e-70 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0190 09 1355434 1356895 Lele12g1070 12 18133333 18134143 hybridization
Lele10g0189 10 1220860 1228976 Lele12g1070 12 18133333 18134143 hybridization