Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1054 ATGTCTTGTAAAACATTCAAGTGTCCTGTGGAGAATTGCAATCGCCACTTTGCTTTCCAAGGAAATATTACAAGACATGTCAAGGAATTTCATAAGGAGAACTCCACCTCTACTACTGCTGAAAATCAAAAGCAGTATGTTTGCCCAGAAGTTGGCTGTGGAAAGTTTACTTGGGTTATGGATAAACAGAAATCTAATCTCCAGAAGCATTTGAAGGCTGTGCACTTTGAAGAGAAACCTTTTGTCTGCACCTTTCCTGGTTGTGGCACGAGATTTTCTTACAAACATGTGAGAGGTAAGCATGAAAAAACTGGATCTCATGTCTATAGCCTCGGAGATTTCGAAGAAGCTGATGAGCAGTTCAGATCAAGGCCTAGAAGAGGGCGAAAGAGAACATGCCCCACTGTTGAAATGTTAGTCAGGAAGAGAGTTACTCAACCTAGTCAATTGAATCACTGGTTACTTATGCAAGAGGATGATTAG 483 0.4099 MSCKTFKCPVENCNRHFAFQGNITRHVKEFHKENSTSTTAENQKQYVCPEVGCGKFTWVMDKQKSNLQKHLKAVHFEEKPFVCTFPGCGTRFSYKHVRGKHEKTGSHVYSLGDFEEADEQFRSRPRRGRKRTCPTVEMLVRKRVTQPSQLNHWLLMQEDD 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1054 160 Gene3D Classic Zinc Finger 45 76 - -
Lele12g1054 160 ProSitePatterns Zinc finger C2H2 type domain signature. 83 107 IPR013087 -
Lele12g1054 160 SMART c2h2final6 81 107 IPR013087 -
Lele12g1054 160 SMART c2h2final6 46 75 IPR013087 -
Lele12g1054 160 SMART c2h2final6 6 31 IPR013087 -
Lele12g1054 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 36 IPR013087 -
Lele12g1054 160 SUPERFAMILY beta-beta-alpha zinc fingers 4 32 IPR036236 -
Lele12g1054 160 PANTHER ZINC FINGER PROTEIN 63 148 - -
Lele12g1054 160 Gene3D Classic Zinc Finger 2 44 - -
Lele12g1054 160 Gene3D Classic Zinc Finger 78 104 - -
Lele12g1054 160 ProSitePatterns Zinc finger C2H2 type domain signature. 8 31 IPR013087 -
Lele12g1054 160 SUPERFAMILY beta-beta-alpha zinc fingers 63 104 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1054 Lele-ChrLele12 18032080 18033284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1054 22 110 C2H2 Transcription Factor Family AT1G72050 49.438 1.69e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g1054 None None None