Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1038 ATGCAGATTTTGTTCCCTAATAAAGTCAATTTCGTAGGTGCTGGTGTGGTGGCTCGAGGCTCTGCAATGGACGATTCCTTCTCCAACGACAAGCTTTGTGGCTTCCTATTTGCGGTTCTCTCTGTGACTCCTTCGCAACCCGACCCGTGTGCCAGTTTAGGCTTCAAAGAGCGCTGCGGCATCTCTGGCGACGGTTCTAATGGCGTCGGATTTAGGTCCGATAACGGCGTTGTTTTAGTTCCGGTGGATTCTGCGGCCAAGCAGAATGAGGGCGGGAACGCATCTCCTTCTGATTCAGGGCAGTGCGAAGTGGTGGGGAGGGAATCTAGGATTGATTACGATTTCAATGGTTCTATTACCCATCGGAGTTCGAGAAAGAAGGGCAATGTAAGAAGGAAAAATCACGTGGCGTCTGGGAGTGGTAGCTTGAGGAGAAAGAGGATGACGAGGATTGGGATGGTGAATGGAAGTGTTAGCGTGATTCACCAGCTTCATGCTTTGGTTAGCAAAAAGTGCTTGAAGATTGATGCTCGAGTGGTTTTGGTTGACCTTGGGGACTGTGGAGAGGCCAGAGCTGTAGTATTGGTCGATGTGTATCTTCCAATTGCATTGTGGAGTGGCTGGCAATTTACTAAATCCGGGTCAACTACTGGTGCTCTTTTTCGGCATTTGAGGTGTGATTGGGATGAGAGAAGATCAAGTCTTTCTTGCTCAAACTATATTATGAAGATTCAGGGGGCTACTGAGAGCATTTGGAACCTTTGTGACTGTCATGTATTTGGGTGTAAACTGCACTACTGTGCGAGAGATTCTTCAAAGAATAGACTATTTGAACTCCATGAAATTTTTAAGAGTATACCTGGTGTTGGAGAAGAGTGGAAGCCTGATAATTCCAGGATAGTACCCTTGAATGACTCTTTGAAATCTGGAATTTGGGTCTTATCTGACGACATTTTAACAAAAATTCTAGCTCCCCTAGGCCCAATGGACATTGCGAGGGTTTCGGCAACTTGTCATCATCTGAGATCCTTGGCTGCTTCAATAATGCCTTGTACAAAGTTAAAACTGTTTCCTCACCAGCAGACTGCTGTTGAGTGGATGTTGCATCGCGAGCGAAATGCTGAACGCTTGGCACATCCTTTGTATGTTTCTTTTTCAACAGAGGATGGCTTTGTTTTCCATATAAATACTGTATCTGGTGAAATAGTCATTGGGGAAGCTCCCACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGACGAACCTGGTTTGGGTAAGACTGTAACAACTCTTTCTCTTATACTGAAGACACAGGGTACGTTGGCAGATCCCCCAGATGGAGCAAAGGTGGTATGGTGTCACCACAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTAATTACATAATTGACAGTAGTAATTTGGGGAAGAGGGACATATGCCAGGATGCTAGGAATAATGAGCACCCTGATCACTCCTCCAAAAGAGCTCGATTGAAGGTTACTGCTGAGAAAACCTGTGGACTTAATAATAAATGTTCTGGGGAAGAAAAAAATTCACCTGTAGGTGAATACTCTGAGCAGCCAATTTCTGCAAGTCGATGCTCTTGGGGCTTGAGTTGCATAAAGAAAGATCTATGTCCCACTTTTGAAGAGGAAGCTGGGCATTCCAAAGAAAGAAAAGATAGTGTAAGCTCTATGAAACTAAAACATGCATCAAATGCTGAAGCACGTGTATCTGAAAATAAGCCAGATGATACTTCATATGGACATGAAAAGGGTTGCAAGGGACCTGAGAAGCCTGTAGTGGATTCTTTTGAGTACAATGACACTTGGATTCAGTGTGACGCTTGCCAGAAATGGCGAAAACTTGCAGATGCCAGTATGGCTAACACTAACGCAGCATGGTTTTGTAGTATGAACACTGATCCTTTGTATCAGAGTTGTAGCATCCCAGAACAACCCTGGCATAATGGCTGTGAAATAACTTATTTACCAGGATTTCATGTGAAAGGTGGTGCAGGGGGTGAGAAGAAGAATGTTTCATTTTTCACTGGTGTGCTTAAGGAGCACCACACAACGATAAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCTAGACTTCCTACTGACAAGCTTTCCGAAATGGAAATAAACGGCATAAGGGGTCCTGTTTTAAGCACCTGCACTGTATCTAGTGGATATCTTAATCCATACCACAAGATATTTCAAGCATTTGGTCTCATTAAGAGAATAGAAAAAGGTGTAACCAAGTGGTACTACCCACGAAATCTAAATAATTATTTGGCTTTTGATGTAACTGCCCTCGGCATGGCTCTGCGTGAACCATTAGATTCATTTAGGCTATACTTGTCAAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCAAACACAGTCAATTGCAGGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCTTCTGTGCACAGTCTGGCATGGGATTATGATGTTGTCATTACTACATTTAGTCGACTGAGTGCAGAGTGGAGCCCACGCAAGAGAAGTGTTCTGATGCAAGTCCATTGGCTGAGGATCATATTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATATCGTTGACAGCTTCAAATCGTTGGGTACTATCAGGAACACCAACACCTAACACACCTAAAAGTCAACTATCTCATTTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCATGGGAAGCTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGATTTCGTCTATTGCATCTACTTCGTAATTGCATGATTAGTGCGAGGAAGACAGACTTGCATAATATTCCTCCATGTATCAAGAAAGCTGTTTTTCTAGATTTTACTGAGGATCATGCCAGAAGTTATAATGAGTTGGTATTAACAGTTCGTCGTAATATATTAATGGCTGATTGGAATGATCCTTCACACATTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGAATTGCAACTATAAAAAACATCAGGCTCTCGTGCTGTGTTGCCGGACATATTAAAGTTACACACGCTGGTGAAGATATTCAGGAAACGATGGATATGTTAGTAGGAAGTGGTATGGATCCTGATTCAGCTGAGTATTCCTCTATAAGATATAATCTGCTTTGTGGTGGCCGGTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCCTTTATTACACCATGTCGACATCTGTTGTGCCTTGACTGTGTCGCTTTAGACAGTATGAAGTGTACTTATCCTGGATGCAATAAATTATATGAGATGCAGAATCCTGATACCCTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATGATTGGGATCCTGATTGGCAATCGACATCTAGTAGCAAGGTATCTTATCTTGTCCAGAGATTGAAAGCTTTACAAGCATCCAATAAGGAGAAGGGCTACTATAATAGCACTGATCAGGTTCTTGCTGAGAGCAGTTGCCCTCTGCTGATGAGAGATGGGAAATCATCATTCCAGCAATGCCCTCTAAGCACTGAACCCAATAATATGCCTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTTATTGAACAGCAGTTGACTATTGCTGGTATTAAATATACTGGGATGTATAGTCCAATGCCTCTAAGCAACAAGAAGAAGTCATTGGCCACATTTCAGCATGATCCCGATTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACGTGTTTTTAATGGAACCAATCTGGGATAGAAGCATGGAAGAACAAGTAATTAGTCGTGCTCATCGCATGGGCGCTTGTCGTCCCATTCATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTCGAATTTTTACAGGAGGCTGATAGAAGTAGAAACTCCCCTAGTGAAGCTGTTGTTCAATCTTATGATGGTAGAGAATTCCCAACTAAAGGTGTTATCCAATTTGAAGAAGGGGGACGAGGACGTTCTTTGCATGATTTTGCAGAAAATAATTATCTACTGAAACTTAGATTTGTGAACAACAATCCTAATGCCGTACAAGTTTGCTTACAGCTGCCAATTGTTTATGAGGCATTTTTTGATGTAAATATTCATTTTGAATGTTACAAAGTGTTAAGGGGTGTCATGCACTATTCTTTTGTGGAGAACTACGTTGTAGCAATTGTTACGTCATTTTTGTCTGCTAATGTCTAA 4410 0.4213 MQILFPNKVNFVGAGVVARGSAMDDSFSNDKLCGFLFAVLSVTPSQPDPCASLGFKERCGISGDGSNGVGFRSDNGVVLVPVDSAAKQNEGGNASPSDSGQCEVVGRESRIDYDFNGSITHRSSRKKGNVRRKNHVASGSGSLRRKRMTRIGMVNGSVSVIHQLHALVSKKCLKIDARVVLVDLGDCGEARAVVLVDVYLPIALWSGWQFTKSGSTTGALFRHLRCDWDERRSSLSCSNYIMKIQGATESIWNLCDCHVFGCKLHYCARDSSKNRLFELHEIFKSIPGVGEEWKPDNSRIVPLNDSLKSGIWVLSDDILTKILAPLGPMDIARVSATCHHLRSLAASIMPCTKLKLFPHQQTAVEWMLHRERNAERLAHPLYVSFSTEDGFVFHINTVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTTLSLILKTQGTLADPPDGAKVVWCHHNGNLKCGYYDIVGNYIIDSSNLGKRDICQDARNNEHPDHSSKRARLKVTAEKTCGLNNKCSGEEKNSPVGEYSEQPISASRCSWGLSCIKKDLCPTFEEEAGHSKERKDSVSSMKLKHASNAEARVSENKPDDTSYGHEKGCKGPEKPVVDSFEYNDTWIQCDACQKWRKLADASMANTNAAWFCSMNTDPLYQSCSIPEQPWHNGCEITYLPGFHVKGGAGGEKKNVSFFTGVLKEHHTTINSETKKALTWLARLPTDKLSEMEINGIRGPVLSTCTVSSGYLNPYHKIFQAFGLIKRIEKGVTKWYYPRNLNNYLAFDVTALGMALREPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVKHSQLQVYVWNDTWKWKPSVHSLAWDYDVVITTFSRLSAEWSPRKRSVLMQVHWLRIILDEGHTLGSSLNLTNKLQMAISLTASNRWVLSGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEAGILKPFEAEMEEGRFRLLHLLRNCMISARKTDLHNIPPCIKKAVFLDFTEDHARSYNELVLTVRRNILMADWNDPSHIESLLNPKQWKFRIATIKNIRLSCCVAGHIKVTHAGEDIQETMDMLVGSGMDPDSAEYSSIRYNLLCGGRCVRCKEWCRLPFITPCRHLLCLDCVALDSMKCTYPGCNKLYEMQNPDTLARPENPNPKWPVPKDLIELQPSYKQDDWDPDWQSTSSSKVSYLVQRLKALQASNKEKGYYNSTDQVLAESSCPLLMRDGKSSFQQCPLSTEPNNMPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMPLSNKKKSLATFQHDPDCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQEADRSRNSPSEAVVQSYDGREFPTKGVIQFEEGGRGRSLHDFAENNYLLKLRFVNNNPNAVQVCLQLPIVYEAFFDVNIHFECYKVLRGVMHYSFVENYVVAIVTSFLSANV 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1038 1469 SMART helicmild6 1250 1332 IPR001650 -
Lele12g1038 1469 MobiDBLite consensus disorder prediction 120 143 - -
Lele12g1038 1469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 762 929 IPR014001 -
Lele12g1038 1469 MobiDBLite consensus disorder prediction 576 596 - -
Lele12g1038 1469 Gene3D - 600 661 - -
Lele12g1038 1469 CDD DEXDc_SHPRH-like 784 970 - -
Lele12g1038 1469 Pfam CW-type Zinc Finger 613 656 IPR011124 GO:0008270
Lele12g1038 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 967 IPR027417 -
Lele12g1038 1469 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 126 1360 - -
Lele12g1038 1469 CDD SF2_C_SNF 1237 1342 - -
Lele12g1038 1469 Gene3D - 1128 1379 IPR027417 -
Lele12g1038 1469 ProSiteProfiles Zinc finger CW-type profile. 608 659 IPR011124 GO:0008270
Lele12g1038 1469 Pfam Helicase conserved C-terminal domain 1234 1332 IPR001650 -
Lele12g1038 1469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1222 1367 IPR001650 -
Lele12g1038 1469 MobiDBLite consensus disorder prediction 559 596 - -
Lele12g1038 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 871 1359 IPR027417 -
Lele12g1038 1469 Gene3D - 778 974 IPR038718 -
Lele12g1038 1469 SMART ultradead3 352 943 IPR014001 -
Lele12g1038 1469 SUPERFAMILY F-box domain 310 347 IPR036047 GO:0005515
Lele12g1038 1469 SMART fbox_2 314 354 IPR001810 GO:0005515
Lele12g1038 1469 ProSitePatterns Zinc finger RING-type signature. 1107 1116 IPR017907 -
Lele12g1038 1469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 437 IPR027417 -
Lele12g1038 1469 Pfam SNF2-related domain 359 1015 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1038 Lele-ChrLele12 17886463 17892763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1038 355 451 RAD5 or RAD16-like Gene Family AT5G22750 30.909 1.02e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele12g1038 SNF2_N 4.7e-96 CL0023