Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1034 ATGGTCAGATCTTATTCCTTTTCTTCGCATTTCCGATTAATAGGTCCTCTAGAAAGGTTAGAGAAGTTGATGCATGAAGTCGGGAACAAATATTGTGCGGATTGCGGGTCTCCAGAGCCAAAATGGGTATCTTCAAATATTGGGGCATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATTTCAAAGGTTCTATCATTGAAGCTAGATCAATGGACAGATGATGAAGTTACTGCACTTGCAAAGTTGGGAGGGAATATATCAGTAAATAAAAAGTACGAAGCTTTCATCCCTAGTTATATAAAAAAGCCAAAGCCAACTTCCTCCATCGATGAGCGTGCTGATTTTATCAGGAGAAAATATGAGTTGCTACAATTTATGGGGTGTGATGAACAATTGTCCTGCCCCTTTATACCACAACAGAGCAGTTCCTCATTCATCATGCCTCCTCTAGACAAGAAAAATTATAATAAACCAGCAAACAAAAATCGTATCGGGAGCGCATTTCGTAACAGCTGGGGAAGAAAAGAACCTGATAATAATAATAACAATAAGTCTTCAAAGAAGAGCAACTCCTTGGCAGGTATGGTGGAATTTGTTGGGTTGATTAAGGTTAATGTGGTCAAAGGCACTAACCTGGTAATCCGGGATGTAATGACTAGTGATCCTTATGTCATCCTTTCTTTGGGCCACCAATCAGTAAGGACACGAGTTATAAAGAACAATTTAAATCCTGTCTGGAATGAGAGCCTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCTTACTCATGGCTGCAAAAGCCTATGAGAAATGTAGAGCCAATGAACCCATGGAATTTGAAAATTTGGTGGCGAGTTTGGACAACGCGCTCGTTAAAGATGGCATCATCTCTCTCGAAGACGGGAAGATCAGACAGGAAATATCTGTGAAGCTGCAGCATGTGGAGAGAGGTGAGCTGGATGTTGAGCTTGAGTGTCTTCCTCTCACTCAATAA 1089 0.4068 MVRSYSFSSHFRLIGPLERLEKLMHEVGNKYCADCGSPEPKWVSSNIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVTALAKLGGNISVNKKYEAFIPSYIKKPKPTSSIDERADFIRRKYELLQFMGCDEQLSCPFIPQQSSSSFIMPPLDKKNYNKPANKNRIGSAFRNSWGRKEPDNNNNNKSSKKSNSLAGMVEFVGLIKVNVVKGTNLVIRDVMTSDPYVILSLGHQSVRTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLMAAKAYEKCRANEPMEFENLVASLDNALVKDGIISLEDGKIRQEISVKLQHVERGELDVELECLPLTQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1034 362 CDD C2_ArfGAP 205 349 - -
Lele12g1034 362 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Lele12g1034 362 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Lele12g1034 362 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Lele12g1034 362 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 139 IPR001164 GO:0005096
Lele12g1034 362 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 297 IPR035892 -
Lele12g1034 362 CDD ArfGap 20 126 - -
Lele12g1034 362 FunFam stromal membrane-associated protein 1 isoform X1 16 137 - -
Lele12g1034 362 Pfam C2 domain 207 295 IPR000008 -
Lele12g1034 362 Gene3D C2 domain 204 362 IPR035892 -
Lele12g1034 362 ProSiteProfiles C2 domain profile. 189 304 IPR000008 -
Lele12g1034 362 MobiDBLite consensus disorder prediction 162 195 - -
Lele12g1034 362 MobiDBLite consensus disorder prediction 165 195 - -
Lele12g1034 362 SUPERFAMILY ArfGap/RecO-like zinc finger 19 132 IPR037278 -
Lele12g1034 362 Pfam Putative GTPase activating protein for Arf 19 131 IPR001164 GO:0005096
Lele12g1034 362 Gene3D Arf GTPase activating protein 16 138 IPR038508 -
Lele12g1034 362 SMART C2_3c 207 302 IPR000008 -
Lele12g1034 362 SMART arf_gap_3 14 139 IPR001164 GO:0005096
Lele12g1034 362 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 15 362 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1034 Lele-ChrLele12 17860853 17864416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1034 19 362 C2H2 Transcription Factor Family AT4G21160 48.256 6.50e-118 343