Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1027 ATGGCGACTCTAGTCTTCCCAAATGAGCATTCTCCTGTTGAAGATGCTGACTCCATCCACAAGTCATTCGAAGACGATTTTCATTATCACAAAAGCTTCAAACATTCAACCATGGCTACTCTTATTTTTCCCAATAATCATTCTCCAGTTGAAGATGCAGAAGTTCTCCGAAAGTCTGTGGAAGGATGGGGAACTGATGAGAAGAGCATAATAACAATCCTGGGTCACAGAAACACTCACCAGAGGCAGCAAATCAGAAAGGCTTATGAGGAACTTTTCCAGGACGATCTTGTCAAACGCCTTGAGAAGGAGATCTCCGGCGACTTCGAGAGGGCTGTGTATCGGTGGATTCTGGAACCGGCAGATCGTGATGCAGTGTTGGCCCATGTGGTCATCAAGGATGGGAAGAACTACAATGTGATTGCAGAGATTGCCACCGTGTTTTCCCCTGAAGAGCTGCTTGCTGTGAGGCGTGCCTACCTCCATCGCTACAAGCACTCCTTGGAAGAAGATGTGGCTGCTACTACTTCAGGCCATCTTCGCCAGCTTTTGGTGGGGTTGGTGACCTCATACAGGTATGTTGGAGAAGAGATCAATGCAAGATTGGCACAATCTGAAGCTGAGATCCTTCATGAGGCTATCAAGGAGAAGAAAGGAAGCGAGGAAGAAGTCATTAGGATATTGACCACAAGGAGCAAGACCCAACTTGTTGCAACCTTCAATCGCTACAGGGAGGCCCATGGAGCGTCCATCTCCAAGAAATTGGTGGATGAGACATCAGATGAGTTCCATAGGGCATTGTACACGGCCATCCGCTGCTTCAATGACCACACCAAGTACTACGAAAAGGTGGTGCGCAATGCAATACAGAAGAGGGGAACTGATGAGGATGCACTGACCCGTGTGATCGTGAGCAGGGCAGAAAAGGACATGAGGGAAATCAAAGAACTGTATTACAAGAGGAACAGTGTTCATCTTGAACAAGCTGTGGCCAAGGAGATCTCAGGAGACTACAAGAACTTCCTGCTCACTCTCTTGGGGAAGGAAGATTAA 1053 0.4758 MATLVFPNEHSPVEDADSIHKSFEDDFHYHKSFKHSTMATLIFPNNHSPVEDAEVLRKSVEGWGTDEKSIITILGHRNTHQRQQIRKAYEELFQDDLVKRLEKEISGDFERAVYRWILEPADRDAVLAHVVIKDGKNYNVIAEIATVFSPEELLAVRRAYLHRYKHSLEEDVAATTSGHLRQLLVGLVTSYRYVGEEINARLAQSEAEILHEAIKEKKGSEEEVIRILTTRSKTQLVATFNRYREAHGASISKKLVDETSDEFHRALYTAIRCFNDHTKYYEKVVRNAIQKRGTDEDALTRVIVSRAEKDMREIKELYYKRNSVHLEQAVAKEISGDYKNFLLTLLGKED 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1027 350 FunFam Annexin 277 348 - -
Lele12g1027 350 FunFam Annexin 38 118 - -
Lele12g1027 350 ProSiteProfiles Annexin repeat profile. 276 347 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 ProSiteProfiles Annexin repeat profile. 119 189 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 SUPERFAMILY Annexin 40 349 IPR037104 GO:0005509|GO:0005544
Lele12g1027 350 FunFam Annexin 201 275 - -
Lele12g1027 350 Gene3D Annexin 28 118 IPR037104 GO:0005509|GO:0005544
Lele12g1027 350 PRINTS Annexin family signature 333 346 IPR001464 GO:0005509|GO:0005544
Lele12g1027 350 PRINTS Annexin family signature 101 117 IPR001464 GO:0005509|GO:0005544
Lele12g1027 350 PRINTS Annexin family signature 209 235 IPR001464 GO:0005509|GO:0005544
Lele12g1027 350 PRINTS Annexin family signature 61 83 IPR001464 GO:0005509|GO:0005544
Lele12g1027 350 PRINTS Annexin family signature 289 309 IPR001464 GO:0005509|GO:0005544
Lele12g1027 350 SMART annex3 293 345 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 SMART annex3 135 187 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 SMART annex3 219 270 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 SMART annex3 64 116 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 ProSiteProfiles Annexin repeat profile. 47 118 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 Gene3D Annexin 119 188 IPR037104 GO:0005509|GO:0005544
Lele12g1027 350 Gene3D Annexin 278 348 IPR037104 GO:0005509|GO:0005544
Lele12g1027 350 PANTHER ANNEXIN 44 345 - -
Lele12g1027 350 FunFam Annexin 119 188 - -
Lele12g1027 350 ProSitePatterns Annexin repeat signature. 293 345 IPR018252 GO:0005509|GO:0005544
Lele12g1027 350 PRINTS Plant annexin signature 154 168 IPR009118 -
Lele12g1027 350 PRINTS Plant annexin signature 196 216 IPR009118 -
Lele12g1027 350 PRINTS Plant annexin signature 261 279 IPR009118 -
Lele12g1027 350 Pfam Annexin 284 345 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 Pfam Annexin 133 187 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 Pfam Annexin 52 113 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 Pfam Annexin 206 267 IPR018502 GO:0005509|GO:0005544
Lele12g1027 350 Gene3D Annexin 201 274 IPR037104 GO:0005509|GO:0005544
Lele12g1027 350 ProSiteProfiles Annexin repeat profile. 201 272 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1027 Lele-ChrLele12 17822884 17826187 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g0271 31 2861136 2861966 Lele12g1027 12 17822884 17826187 CCT
Lele32g1151 32 11698623 11700611 Lele12g1027 12 17822884 17826187 CCT
Lele12g1027 12 17822884 17826187 Lele12g1027 12 17822884 17826187 ECH