Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1026 ATGTCACTCCCCGAAGAAGTAGAAGCTCTAACCAAAGCTTTCTCAGGACATGGAATTGATGAGAAATCAGTGGTTTCGATTTTGGGAAAATGGGAGCCGGAGAATCGAAAGGCTTTCAGGAAGGGAACGCCGAATCTCTTCGTTGAGGATGAACGCCAATTTGAGAAGTGGGATGATCATCGAGTTCTACTTCTGAAACACGAATTCATGCGTTTTAAGAATGCAGTGGTACTGTGGGCAATGCATCCATGGGAAAGAGATGCCCGTTTGGCCAAGGAAGCACTGAAGAAGGGTCCTCATGCCTATGGATTGCTAGTTGAGATTGCATGCACCAGGACCTCAGAAGAGCTTCTGGGAGCTAGGAAGGCCTACCATTCTCTTTTTGACCGTTCCCTTGAAGAAGACATTGTCTCTCTTATTGATGGTGCTGAACGTAAGCTCTTGTTTTCCCTTGTGAGTGCCTATAGATACGAAGGATCAAAGGTTAAAAATGAGACTGCAAAATCAGAGGCCCAAGCACTGTCTGTTGCCATTAAGGCTGCTCATGAGAAGCCAATCCTTGAGGATGAGGAAGTAATAAGGATACTAGCAACAAGAAGCAAGCCTCATCTCCAGGCAGTTCAGAAGCACTACAAAGAATTATATGGCAAAAACCTTGATGAGGATCTTGATGACTTAAGGTTAAAAGAGACTGTGCAATGCCTTTGTTCCCCTTTAACATACTTTATTCAGGTTGTGGATGCAGCATTAAGATTTGATGCAGATAAGAATACCAAGAAAGCTCTCACACGTGTGATTGTTACTCGAGCTGACACAGATTTGAAGGATATCATGGATGAATATCAACGCTTGTTTAGAGTTTCCTTAACCCAGAAAGTTGAAGATACAACTAATGGCAACTTCAAGGATTTCTTGCTTACCTTGATCGCTGGAGCAGCCTAA 942 0.4342 MSLPEEVEALTKAFSGHGIDEKSVVSILGKWEPENRKAFRKGTPNLFVEDERQFEKWDDHRVLLLKHEFMRFKNAVVLWAMHPWERDARLAKEALKKGPHAYGLLVEIACTRTSEELLGARKAYHSLFDRSLEEDIVSLIDGAERKLLFSLVSAYRYEGSKVKNETAKSEAQALSVAIKAAHEKPILEDEEVIRILATRSKPHLQAVQKHYKELYGKNLDEDLDDLRLKETVQCLCSPLTYFIQVVDAALRFDADKNTKKALTRVIVTRADTDLKDIMDEYQRLFRVSLTQKVEDTTNGNFKDFLLTLIAGAA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1026 313 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 PRINTS Annexin family signature 177 203 IPR001464 GO:0005509|GO:0005544
Lele12g1026 313 PRINTS Annexin family signature 252 272 IPR001464 GO:0005509|GO:0005544
Lele12g1026 313 PRINTS Annexin family signature 296 309 IPR001464 GO:0005509|GO:0005544
Lele12g1026 313 PRINTS Annexin family signature 15 37 IPR001464 GO:0005509|GO:0005544
Lele12g1026 313 Gene3D Annexin 152 240 IPR037104 GO:0005509|GO:0005544
Lele12g1026 313 Gene3D Annexin 241 310 IPR037104 GO:0005509|GO:0005544
Lele12g1026 313 FunFam annexin D4 240 310 - -
Lele12g1026 313 ProSiteProfiles Annexin repeat profile. 165 244 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 PANTHER ANNEXIN 5 308 - -
Lele12g1026 313 FunFam Annexin 82 151 - -
Lele12g1026 313 Pfam Annexin 259 308 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 Pfam Annexin 87 151 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 Pfam Annexin 187 224 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 FunFam annexin D4 152 239 - -
Lele12g1026 313 SMART annex3 188 235 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 SMART annex3 102 151 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 SMART annex3 259 308 IPR018502 GO:0005509|GO:0005544
Lele12g1026 313 Gene3D Annexin 82 151 IPR037104 GO:0005509|GO:0005544
Lele12g1026 313 SUPERFAMILY Annexin 4 310 IPR037104 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1026 Lele-ChrLele12 17818630 17820795 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1309 29 19693263 19696782 Lele12g1026 12 17818630 17820795 CCT
Lele12g1026 12 17818630 17820795 Lele12g1026 12 17818630 17820795 ECH
Lele09g0243 09 1750643 1753958 Lele12g1026 12 17818630 17820795 hybridization
Lele10g0234 10 1559863 1563584 Lele12g1026 12 17818630 17820795 hybridization