Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1008 ATGGAGAAGGATGCTCGGGTTCGGTGCTCGGAGAATCAAGAGCTTGCAGCTTACATGTTCGATAAATGGAAAGAATTGGCAGAGAAACCAAAAGGGATTTCAGAAAACATTGAAAAGACTCTGTCTAAAGCTTACTACAATGTCTGTAACTCAAAAACTCCCATTCAAACCATGAAGGACCTTTCCGAGGTCAGGGGCGTGGGAAAATGGATTTTGAAGCTCATGCAGGGATTTTTTGGGACCAGTTCTGGAAATTCTGAAGCTGAAGACCTGACCAAAAAGGGAAAGAAAAATAATGGAAGCAGACGATATATGCCTCAAAAAAATTCTGTCGCATATGCATTGTTGATAACTCTTTACAGGGGAACTTCAAATGGGAATGAGTTTATGCGGAAAGAGGAACTTATTGATGCCGCTGAAACTAGTGGGTTGTCTCGAGCGCCAATTGGGCCAGAAAAAGGAAGAGGAAAGCCTGGATTTGGAAGTTCTCCAAGGGATTGGTATAGTGGATGGAACTGCATGAAGACACTGATCACAAAGAGTTTAGTTGTAAAATCCAGCTGTCCGTTGCAATACTTCATATCTATATATATTTTTTGCTTTTATTCCTTTTTCAGGTACATGCTAACTGAAGAAGGTAAGGAAGCAGCACGTGAATGTCTCAGAAGATCTGGAATGGAAGATTCCCAAGACAACTCATTTACTATAGAATGTTCTGGTATGGATAAGCAGAACACTTTAGACATGGAACACATTGATCATGATCTGGATACTGAAGTGATGTCACCACCAACCCAACAAAAGAAGATGAATGTTCCTCTTGATTTCCTAGAGAGGTTTACAAGCATGGGTTACTCCAAGGAACAAGTTGTTAGTGCATTCACTGATGTTTCCAGAAGCCACCCAGATAAGGATGTTTCATCTTTGTGGCCGGCTGTTTTATGTCATCTTAGAGAGGAGCAAGTCTATGGTTTACAGGAGGAATCTCAAACCATGAGAAACAATTTCTGCATGACAAGTTCTATTGCTGTCTCAAGCGGTTCGATTGATCTCACTGGAAATGAGAGCAGATCTGTCAGTGCATCTTGTGGAAATATGCCGAGCTTTAGGTCTCCTGAACCTGATACATCTTTTGCCTTGAGGGCCTGTTCATCATCTGACCATGCCATGCCAAAATCGGTTGGAGAGGGGCCTAAATCAATGGTGAACAGTTTAAGTTTACCACCATTGAGCTTGGGGGAGAGATTTGAGGATGCATATGAAGTGATTTTAATATTGGATGATCGGGAGCAATTTGCCACTCAGGGATCACGATCCAAGAGAATTATTGAGAATATCCGCAGTCAATTCCAAATCCAAATAGATGTTCGGAGATTGGCTGTTGGAGATGGGATTTGGATAGCTCACCATAAAACTCTTGACAGTGAATATGTGCTGGATTTTGTTGTTGAGAGGAAGAATGTTGATGATTTGCGTTCTTCAATCAGGGATAACCGTTATAAGGATCAAAAATTAAGACTTTTGAGGTGTGGACTGAAGAAGCTGATATATCTTGTGGAAGGTGATCCGAATTCCTCTGAAGCTGCTGAAAGCATAAAAACTGCCTGTTTTACAACAGAGATTTTGGAGGGTTTTGATGTGCAGAGAACAAGTGGTTTGGCGGATACCCTAAAGAAGTATGGTTATCTTACCCAAGCAATTTCTCAATATTATAAGACAATAGTTCTGGATGACCATGTTAAGTTCTCTGGAATATGCCCTCCTTTTGATGAATTTGTCAAAAGGTGTCAATATCTTGACAAAATGACAGTCAGTGATGTATTTGCTGTCCAGCTTATGCAGGTCCCTCAGGTTACAGAGGAGGTTGCCCTGGCTGTGCTGGATTTGTACCCCACACTTCTCTCTCTTGCCAAAGCCTACTCTCTTCTTGATGGAGATGTATGTGCACAAGAGGACATGCTCAGAAAACAGAGCAATAATGTGATCAATGCAGTTGCCAGTAGGAACATTTTCCAGTTAGTTTGGGGTAGCTGA 2034 0.4154 MEKDARVRCSENQELAAYMFDKWKELAEKPKGISENIEKTLSKAYYNVCNSKTPIQTMKDLSEVRGVGKWILKLMQGFFGTSSGNSEAEDLTKKGKKNNGSRRYMPQKNSVAYALLITLYRGTSNGNEFMRKEELIDAAETSGLSRAPIGPEKGRGKPGFGSSPRDWYSGWNCMKTLITKSLVVKSSCPLQYFISIYIFCFYSFFRYMLTEEGKEAARECLRRSGMEDSQDNSFTIECSGMDKQNTLDMEHIDHDLDTEVMSPPTQQKKMNVPLDFLERFTSMGYSKEQVVSAFTDVSRSHPDKDVSSLWPAVLCHLREEQVYGLQEESQTMRNNFCMTSSIAVSSGSIDLTGNESRSVSASCGNMPSFRSPEPDTSFALRACSSSDHAMPKSVGEGPKSMVNSLSLPPLSLGERFEDAYEVILILDDREQFATQGSRSKRIIENIRSQFQIQIDVRRLAVGDGIWIAHHKTLDSEYVLDFVVERKNVDDLRSSIRDNRYKDQKLRLLRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSGLADTLKKYGYLTQAISQYYKTIVLDDHVKFSGICPPFDEFVKRCQYLDKMTVSDVFAVQLMQVPQVTEEVALAVLDLYPTLLSLAKAYSLLDGDVCAQEDMLRKQSNNVINAVASRNIFQLVWGS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1008 677 Gene3D - 96 232 IPR036388 -
Lele12g1008 677 Gene3D - 416 566 - -
Lele12g1008 677 PANTHER CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 3 677 IPR033309 GO:0000737|GO:0006302|GO:0008821
Lele12g1008 677 SMART ERCC4_2 423 523 IPR006166 GO:0003677|GO:0004518
Lele12g1008 677 SUPERFAMILY Restriction endonuclease-like 420 566 IPR011335 -
Lele12g1008 677 FunFam Crossover junction endonuclease MUS81 96 196 - -
Lele12g1008 677 FunFam Crossover junction endonuclease MUS81 602 677 - -
Lele12g1008 677 MobiDBLite consensus disorder prediction 83 103 - -
Lele12g1008 677 Gene3D - 602 677 IPR042530 -
Lele12g1008 677 Pfam ERCC4 domain 427 557 IPR006166 GO:0003677|GO:0004518
Lele12g1008 677 FunFam crossover junction endonuclease MUS81 isoform X1 418 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1008 Lele-ChrLele12 17686245 17692679 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0264 09 1860986 1873298 Lele12g1008 12 17686245 17692679 hybridization
Lele10g0258 10 1705327 1709155 Lele12g1008 12 17686245 17692679 hybridization