Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g1001 ATGAGAATGCTATTCCCTTGTGAATTCGATGAGAGCATTTTTTCTTCTTCACTTGTTCCAAAGCACCGATCAAACTTCTCTGAAACGGTGATACTTGTCCTTTTTAGTAACGAATTTACAGATTTCCAGGCAAATGGAATGGGAAAGAAGAAGAGCTGGTTTTCTCTGATAAAGAGGCTTTTTAGATGGGACACAGAGTCTGAACAAGGCAAGGCAAGGAAGGCATTGAGAGCATTGAAGGGAATAGTCAAGCTTCAAGCTATTATTAGAGGCAGAGCAGTGAGTCGCCAAGCTCTGAGGTCCCTTAAGCGTTTGCAGTCAATTGTTAGCGTCCAATCACAAGTCTCTGCTTCAAGGAGACTTCAATTGCTTGAACCCAGATCTCTCTATGCTCCAAGGGACAAGATATTAAGGATGGATTCAAACAGTGAGAAAAGGAGGAAGGAAGAGGTAGAGACGTCATGCATGAACAAGAAAGAAGCTCTTCTTAGAAGAGAGAGAACTAAACAGTACTCATTCGACCATCGAATGTCTGCAGAAACAGAAAGAAACAAAGTAAATGGAAGATGGAGGTACTGGCTAGAGCAATGGGTAGATGCCCAACTTTCTAAGAGCAAAGAGCTTGAAGATTTAGACACTACAGATTTCAGCTCTCATTACAAAGGTGCAAACGATAATAATGGAGGAATTAGATCACTTAAACTGAGAAATCCTCAGACACAGAGGCAAATAAATCAGATTGAAGAAGGGTTGATGAACTGTCACAGGAGGCAGTGTTCTTCAGCGGGAGGAAGAAAAGAAGACTACTCCTCATTCACAAGCTCTCCTGTGATAACACCCACTTACATGGCAGCAACTGAATCAGCAAAAGCCAAAGCAAGATCCATAAGCTCCCCAAGATTAAGGGAATGGAATAATAATTTGGAGACTGGTTCTGATTATAGCTATCCATCACCATGCAAGAAGAAGCTACCTCTTGTATCTTCTGTTAACACTACTACTAGTGAGGTTTTTGGAAGTACTAGTATTGGCAAGTTAAGTGGCAGTAATTATAAGCAGATATCTCCTAGGTTAGAGGGTACAACAGCTTCAGTGATGCATAAGCATATGGAACGAAAATTAGAAAGGATTTTCAAGCGTTCTACAGACTTTCAACTGATGACCACAGGGGATACTACTGCAAATCAAGGGGCATCTAGAAACCTGCAAATGCCTCCACAGTCACCCCCATCACCCAAAACCAACAAACTTTATTTTTTCTATGGTCACCGCAAACCCTCTCAAAATCGGCCAGTTGTTCGTGGTGGTCTTTTCTCCAATCGCCAAACACTTAACCCCAATAAACCAAAATATACTGAAGACCAGCCCTTTGATATACACAAGTGGGACCCTTACTTCCTCTCCCAGTCACCATCATCTTCAGCACCAGAACCATCACCAGAAAACTCATTCACCATCTCTCTCCGGTTATCTCCGATTGCCCGATTCATTATTGATGCCTTCCGCAAGAACCACAACAAGTGGGACTCGTCTGTGGTGGAAGAACTTGGAAAGCTCCGTAGGGTGACACCTAACCTGGTGGTTGAGGTGCTTAAAGTCCAAAATAATCCCACCCTTGCCTCTAAGTTTTTCCACTGGGCAGGGAAGCAGAAGGGTTACAATCACAATTATGCCTCCTACAATGCATTTGCTTATTGCTTAAATCGTAACAATCAGTTTCGGGCAGCAGATCAGCTTCCGGAACTGATGGATTCACAGGGGAAGCCACCTAGTGAGAAGCAGTTTGAGATCTTAATCAGAATGCATTCAGATGCCAATAGGGGTCTTAGGGTCTATTATATTTATGAGAAAATGAAGAAATTTGGGATTAAACCTAGGGTCTTTTTGTATAATAGGATTATGGATGCATTAATCAGAACAGATCACTTGGATTTGGCATTATCAGTTTATGATGATTTTAGAGAAGATGGTTTGGTTGAAGAGTCCATTACTTTTATGATTTTGATAAAAGGATTGTGTAAAGTAGGGAGGATCGATGAGATGTTGGAGATTCTGAGTCAAATGAGGACCAACCTGTGTAAGCCAGATGTATTTGCCTATACTGCTATGGTTCGTGTGCTGGTTTCAAAGGGCAATTTAGATGGGTGTTTGAGGGTTTGGGATGAAATGAAGAGGGATGGGGTTGAGCCTGATGTCATGGCTTATGCAACATTAATTACAGGTTTATCTAAAGGGGGCAGAACTGAAGAGGGTTATCAATTATTCAAGGAGATGAAGAAAAAGGGCCATTTGATTGATAGAGCAATATATGGAGCACTCATCGAGTCATTCGTGGCAAGGCGGGAGGTTAGCTCTGCTTGTGATTTGTTGAAGGATTTGATGGCTTCAGGATATAGGGCTGATTTGGGGATATATAATTCACTTATTGAAGGTTTATGTAGCGTGAATCAAGTTGAGAAGGCTTGCAAGATTTTCCAATTCACTATACAGGAAGATCTTAAACCAGACTTTGTATCTGTAAAACCCTTATTGATGTCTTATGCTGAAGCAGAACAAAAGGAATATTTTTACCAGTTGCTCAAGAAAATGAAGAACTTGGGCTTACCAGTTCTTGATGACCTGTCCAAATTCTTTGCCTTTTTCATAGAGAAGAAGGGACCGATACCAGCACTAGATACATTTTCGGATCTGAAAGCAAAAGGTTATATTAGTGTCAAAATATACAACACTCTTATGGATTCTCTGCAAAAGATTGGTCAGGCCAAGAAGGCATTATCACTCTTCGATGAAATGAATGGCTCAACATGTACGCCTAATTCATCTACATACAGTATAGCAATTACATGTTTTGTTGATCTTGAGGAAATTCCAGAGGCATGTGAATGTCACAATAAGATCATTGAGATGTCTTCTATTCCATCTGTTGCTGCTTACATTTGTCTTTCCAAAGGGCTTTGCAAAATTGGAGAGATCGATGCAGCCATAATGCTTGTTCGTGACTGCTTAGCAAATGTCGATAGTGGACCGATGGAGTTTAAGTATACTCTTACCATTCTCCATGCATGCAAGTCAAATGATGCAGAGAATGTGATTGAAGTCTTAAATGAGATGATGCAAGAAGGTTATCCTCCTGATGAAGTCATATACTCTGCAATCATCTCTGGCATGTGTAAGCATGGAACAATTGAAGAGGCCAGGAAGGTTTTCGCAAACTTGAGGGAGCGGAAATTATTGACCGAAGCCAATGCAATTGTATATGATGAAATACTAATTGATCACATGAAGGAAAAGACAGCACAGTTGGTGCTGTCAGGATTGAAGTTCTTCGGTCTAGAGTCCAAGTTAAAATCAAAAGGTGTTAAGTTCCTACCAAGTTGA 3378 0.4091 MRMLFPCEFDESIFSSSLVPKHRSNFSETVILVLFSNEFTDFQANGMGKKKSWFSLIKRLFRWDTESEQGKARKALRALKGIVKLQAIIRGRAVSRQALRSLKRLQSIVSVQSQVSASRRLQLLEPRSLYAPRDKILRMDSNSEKRRKEEVETSCMNKKEALLRRERTKQYSFDHRMSAETERNKVNGRWRYWLEQWVDAQLSKSKELEDLDTTDFSSHYKGANDNNGGIRSLKLRNPQTQRQINQIEEGLMNCHRRQCSSAGGRKEDYSSFTSSPVITPTYMAATESAKAKARSISSPRLREWNNNLETGSDYSYPSPCKKKLPLVSSVNTTTSEVFGSTSIGKLSGSNYKQISPRLEGTTASVMHKHMERKLERIFKRSTDFQLMTTGDTTANQGASRNLQMPPQSPPSPKTNKLYFFYGHRKPSQNRPVVRGGLFSNRQTLNPNKPKYTEDQPFDIHKWDPYFLSQSPSSSAPEPSPENSFTISLRLSPIARFIIDAFRKNHNKWDSSVVEELGKLRRVTPNLVVEVLKVQNNPTLASKFFHWAGKQKGYNHNYASYNAFAYCLNRNNQFRAADQLPELMDSQGKPPSEKQFEILIRMHSDANRGLRVYYIYEKMKKFGIKPRVFLYNRIMDALIRTDHLDLALSVYDDFREDGLVEESITFMILIKGLCKVGRIDEMLEILSQMRTNLCKPDVFAYTAMVRVLVSKGNLDGCLRVWDEMKRDGVEPDVMAYATLITGLSKGGRTEEGYQLFKEMKKKGHLIDRAIYGALIESFVARREVSSACDLLKDLMASGYRADLGIYNSLIEGLCSVNQVEKACKIFQFTIQEDLKPDFVSVKPLLMSYAEAEQKEYFYQLLKKMKNLGLPVLDDLSKFFAFFIEKKGPIPALDTFSDLKAKGYISVKIYNTLMDSLQKIGQAKKALSLFDEMNGSTCTPNSSTYSIAITCFVDLEEIPEACECHNKIIEMSSIPSVAAYICLSKGLCKIGEIDAAIMLVRDCLANVDSGPMEFKYTLTILHACKSNDAENVIEVLNEMMQEGYPPDEVIYSAIISGMCKHGTIEEARKVFANLRERKLLTEANAIVYDEILIDHMKEKTAQLVLSGLKFFGLESKLKSKGVKFLPS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g1001 1125 Gene3D Tetratricopeptide repeat domain 782 876 IPR011990 GO:0005515
Lele12g1001 1125 Gene3D Tetratricopeptide repeat domain 691 781 IPR011990 GO:0005515
Lele12g1001 1125 PANTHER ATPASE EXPRESSION PROTEIN 3 1014 1092 - -
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 904 938 IPR002885 -
Lele12g1001 1125 SUPERFAMILY TPR-like 692 1069 IPR011990 GO:0005515
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1045 1079 IPR002885 -
Lele12g1001 1125 MobiDBLite consensus disorder prediction 390 404 - -
Lele12g1001 1125 MobiDBLite consensus disorder prediction 390 413 - -
Lele12g1001 1125 Gene3D Tetratricopeptide repeat domain 1007 1077 IPR011990 GO:0005515
Lele12g1001 1125 Gene3D Tetratricopeptide repeat domain 497 690 IPR011990 GO:0005515
Lele12g1001 1125 Pfam Protein of unknown function (DUF4005) 267 334 IPR025064 -
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 626 660 IPR002885 -
Lele12g1001 1125 MobiDBLite consensus disorder prediction 430 453 - -
Lele12g1001 1125 Pfam PPR repeat family 905 950 IPR002885 -
Lele12g1001 1125 Pfam PPR repeat family 695 744 IPR002885 -
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 801 835 IPR002885 -
Lele12g1001 1125 MobiDBLite consensus disorder prediction 433 450 - -
Lele12g1001 1125 Gene3D Tetratricopeptide repeat domain 883 1006 IPR011990 GO:0005515
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 730 IPR002885 -
Lele12g1001 1125 Pfam PPR repeat 1041 1069 IPR002885 -
Lele12g1001 1125 TIGRFAM PPR: pentatricopeptide repeat domain 663 697 IPR002885 -
Lele12g1001 1125 TIGRFAM PPR: pentatricopeptide repeat domain 804 836 IPR002885 -
Lele12g1001 1125 TIGRFAM PPR: pentatricopeptide repeat domain 1047 1077 IPR002885 -
Lele12g1001 1125 TIGRFAM PPR: pentatricopeptide repeat domain 734 766 IPR002885 -
Lele12g1001 1125 TIGRFAM PPR: pentatricopeptide repeat domain 907 939 IPR002885 -
Lele12g1001 1125 TIGRFAM PPR: pentatricopeptide repeat domain 699 732 IPR002885 -
Lele12g1001 1125 Pfam Pentacotripeptide-repeat region of PRORP 749 865 IPR033443 -
Lele12g1001 1125 Pfam Pentacotripeptide-repeat region of PRORP 571 694 IPR033443 -
Lele12g1001 1125 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g1001 Lele-ChrLele12 17638031 17646549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g1001 72 360 IQD Protein Family AT5G13460 46.865 1.55e-58 206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0274 10 1809756 1815063 Lele12g1001 12 17638031 17646549 hybridization