Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0997 ATGAACGAAACCTTTTACTTAATAATACATTTAATAATTTACCGCAACTATATGGAGCAGTACCTCAGAGAGAACTTCGATGTCTCTTCCAAGCGGCCCTCCGAGGCCGCCCTCCTCCGATGGAGATCTGCCGTCTCCATTGTTAAGAATCCCCGCCGCCGCTTTCGCATGGTCGCGGACCTCGCCAAGCGCGCTGAGGCTGAGAAGAAACGCAAGAACCTCCAGGAAAAGGTACGAGTAGCCCTCTATGTGCAAAAAGCAGCATTGCAGTTTATTGACGCTGGACAGCGGGGTGCGTCGACCACGCTCTCCAGAGAGGTTAGAGAATCAGGTTATGCTGTTGAGCCCGACGAATTAGCATCCCTATGCCGATCACACGATAAAAAATCCTTAGAACATAGTGGAGGAGTAGAAGGATTGGCAAAAGCAGTTAATGTGTCACTGAAAGACGGTGTTAGGTCAAGCAATGTTCCTCATAGACAAAGCATCTTCGGTTCTAACCGCTTTGCTGAGAAGCCCTCAAGAGGATTTTGGATGTTCGTTTGGGATGCAATGCAAGACATGACTCTCATTATCCTTTTGTTCTGTGCTCTAGTTTCAATAGGAGTGGGAATCCCAACCGAAGGTTTCCCGAAAGGTATATATGATGGAGTTGGAATCGCACTCTCTATTCTCTTAGTCGTCTTCGTAACTTCAGTTAGTGACTATAAACAGTCTTTGCAATTCAAAGATTTGGAAAATGAGAAGAAGAATGTTACTATTCAAGTCACTAGAGATGGGAACAGACAAAAGGTTTCAATCTATGAGTTAGTGGTAGGAGATATTGTTCATTTATCAATTGGAGACGTAGTTCCTGCAGATGGAGTATTCATAGCAGGTTACAGCTTATTAATTGATGAATCAAGCTTATCAGGGGAGAGTGAAGCTGTGAATGTCGACCAAAATGCTCCTTTTCTTCTAGCTGGGACCAAAGTACAAGATGGATCTGCTAAGATGCTTGTGACTTCTGTTGGTATGAGAACTGAATGGGGAAGATTAATGTATACTCTGAACGAAGTGGGAGACGATGAGACGCCGTTGCAGGTTAAACTAAATGGGGTTGCAACGATAATTGGAAAGATTGGCTTGGTTTTTGCCCTGATGACATTCTTGGTCCTAACTGGCAGGTTTTTGGTACGTAAAATAGTTCATAACGAAATCACTCAATGGTCGTTACACGACGCATCTGAGCTTCTCAATTTCTTTGCAACTGCTGTGATTATAATAGTTGTGGCAGTTCCAGAGGGGCTTCCTTTGGCAGTGACGCTAAGCCTTGCGTTTGCAATGAAGAAGTTAATGAACGATAAGGCACTTGTCAGGTACCTTTCTGCATGCGAGACGATGGGCTCAGCTGGTTGTATTTGCACGGACAAAACAGGAACTTTGACAACAAACCACATGGTTGTGCATAAAATATGGATTTGTGGACAAACTAAGGAGATAAAAACTATTAGCAGTGAGAATAATTTGTTAAAATCGTTGGTTTCTCAACAAATATTTGATCTCTTTTTGCAGTCAATATTTCAGAATACTGGCTCGGAGGTTGTCAATGGTGAAAACGGGAACATTAAGGTTATGGGTACTCCGACAGAGAAGGCATTGCTGGAATTTGGGTTGCTTGCTGGAGGAGAACCTAAGGTTTATAATGACAAGTATAAGATCTTAAAGGTCGAACCATTCAATTCGAACAGAAAAAGAATGTCGGTACTAGTGTCTCTTCCTGGTACTGCCAATTATAGGTCTAGAGCATTCTGTAAAGGAGCATCAGAAATAGTTCTGGAAATGTGCGACAAACTTGCGGATTCAAATGGCGAAGTCGTTCGTCTGTTCGAAGAACAAAGAAGGAACGTCAAGAAAGTTATCAATGATTTTGCTTCTGAAGCTCTAAGAACTCTCTCTATCGCCTTTAAAGATATAGAAGGAACTATTACTGATATTCCAGAGGAGAATTTTACATTGTTGGCTATTGTTGGGATCAAGGATCCTGTGAGGCCTGGAGTAAAAGAAGCTGTAGAGATTTGTAAAGCAGCTGATATTTCAGTAAAGATGGTGACTGGTGATAATATAATTACTGCTAAAGCAATAGCTAGAGAATGTGGTATCTTGACAGATGGGATAGCCATCGAAGGACCCGAATTCCGTAGGAAGAACCAGCAAGAAATGGAGGAGATAATACCAAGAATACAGGTTATGGCTCGATCGTTGCCTCTGGACAAGCACACTTTAGTGACCCATTTGAGGAAGGACTTCGATGAAGTTGTTGCAGTAACTGGTGATGGGACCAACGATGCTCCAGCATTGCGTGAGGCGGATATTGGCCTTGCTATGGGCATAGCAGGAACTGAGGTCGCAAAAGAAAATGCGGATGTCATTGTTATGGATGATAACTTCATAACCATACTGAACGTTGCTAGATGGGGCCGATCTGTCTACATCAATGTTCAGAAGTTTGTTCAATTCCAATTAACAGTTAATGTTGTGGCTCTCATCCTCAATTTTGTTTCCGCCTGTGTGTCAGGTTCTGCCCCTCTTACCGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACTCTTGGTGCTTTGGCTTTGGCTACAGAACCTCCCCATGAAGGGCTAATGAAAAGACCACCTATCGGAAGGAATGTCAAACTCATAACCGGCATTATGTGGAGGAATATAATTGGTCAGAGCCTCTATCAAATAGTTGTCCTTTTGGTTCTCAAATTTCGTGGTAAACAGATTTTGAAGCTTATTAATCATGATGCAACATCTGTTCTGAATACTCTCATATTCAACGTCTTTGTATTTTGCCAGGTATTCAACGAGATAAACAGCCGTGACATGGAGAAGATCAATGTTTTCCGAGGCATGTTCAGCAGTTGGATCTTCCTCGCAGTTTTGGCCTCAACAATATGTTTCCAAGTCATACTTGTTGAATTTCTGGGTACTTTTGCTCAAACAGTACCACTTTGTTGGGACCTATGGCTAGCCAGTGTCATAATTGGTGCAGTGAGCTTACCCTTAGCTGCCATTGTCAAATGCATTCCCGTTCCAGTGGCTCGTTACATGGACCGCCATCATCATCATGATTACGTACCTATCCCAAGCGGCCCTGAGATGGCATGA 3168 0.4287 MNETFYLIIHLIIYRNYMEQYLRENFDVSSKRPSEAALLRWRSAVSIVKNPRRRFRMVADLAKRAEAEKKRKNLQEKVRVALYVQKAALQFIDAGQRGASTTLSREVRESGYAVEPDELASLCRSHDKKSLEHSGGVEGLAKAVNVSLKDGVRSSNVPHRQSIFGSNRFAEKPSRGFWMFVWDAMQDMTLIILLFCALVSIGVGIPTEGFPKGIYDGVGIALSILLVVFVTSVSDYKQSLQFKDLENEKKNVTIQVTRDGNRQKVSIYELVVGDIVHLSIGDVVPADGVFIAGYSLLIDESSLSGESEAVNVDQNAPFLLAGTKVQDGSAKMLVTSVGMRTEWGRLMYTLNEVGDDETPLQVKLNGVATIIGKIGLVFALMTFLVLTGRFLVRKIVHNEITQWSLHDASELLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRYLSACETMGSAGCICTDKTGTLTTNHMVVHKIWICGQTKEIKTISSENNLLKSLVSQQIFDLFLQSIFQNTGSEVVNGENGNIKVMGTPTEKALLEFGLLAGGEPKVYNDKYKILKVEPFNSNRKRMSVLVSLPGTANYRSRAFCKGASEIVLEMCDKLADSNGEVVRLFEEQRRNVKKVINDFASEALRTLSIAFKDIEGTITDIPEENFTLLAIVGIKDPVRPGVKEAVEICKAADISVKMVTGDNIITAKAIARECGILTDGIAIEGPEFRRKNQQEMEEIIPRIQVMARSLPLDKHTLVTHLRKDFDEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIVMDDNFITILNVARWGRSVYINVQKFVQFQLTVNVVALILNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHEGLMKRPPIGRNVKLITGIMWRNIIGQSLYQIVVLLVLKFRGKQILKLINHDATSVLNTLIFNVFVFCQVFNEINSRDMEKINVFRGMFSSWIFLAVLASTICFQVILVEFLGTFAQTVPLCWDLWLASVIIGAVSLPLAAIVKCIPVPVARYMDRHHHHDYVPIPSGPEMA 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0997 1055 Pfam E1-E2 ATPase 253 446 - -
Lele12g0997 1055 Pfam haloacid dehalogenase-like hydrolase 466 784 - -
Lele12g0997 1055 ProSitePatterns E1-E2 ATPases phosphorylation site. 470 476 IPR018303 -
Lele12g0997 1055 SFLD Haloacid Dehalogenase 450 822 - -
Lele12g0997 1055 Gene3D - 183 1029 - -
Lele12g0997 1055 Gene3D - 465 815 IPR023214 -
Lele12g0997 1055 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 124 1031 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lele12g0997 1055 SUPERFAMILY HAD-like 467 875 IPR036412 -
Lele12g0997 1055 Gene3D - 151 351 - -
Lele12g0997 1055 SFLD p-type atpase 450 822 IPR044492 -
Lele12g0997 1055 FunFam Calcium-transporting ATPase 787 1033 - -
Lele12g0997 1055 FunFam Calcium-transporting ATPase 669 815 - -
Lele12g0997 1055 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 732 858 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele12g0997 1055 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 566 716 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele12g0997 1055 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 220 493 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele12g0997 1055 CDD P-type_ATPase_Ca_PMCA-like 159 903 - -
Lele12g0997 1055 SUPERFAMILY Calcium ATPase, transmembrane domain M 132 1031 IPR023298 -
Lele12g0997 1055 Pfam Cation transporter/ATPase, N-terminus 132 200 IPR004014 -
Lele12g0997 1055 Gene3D - 33 94 - -
Lele12g0997 1055 Pfam Ca2+-ATPase N terminal autoinhibitory domain 22 66 IPR024750 GO:0005516
Lele12g0997 1055 PANTHER CATION TRANSPORTING ATPASE 102 1031 - -
Lele12g0997 1055 SMART Cation_ATPase_N_a_2 131 205 IPR004014 -
Lele12g0997 1055 PRINTS H+-transporting ATPase (proton pump) signature 802 827 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele12g0997 1055 PRINTS H+-transporting ATPase (proton pump) signature 630 648 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele12g0997 1055 PRINTS H+-transporting ATPase (proton pump) signature 770 786 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele12g0997 1055 FunFam Calcium-transporting ATPase 478 675 - -
Lele12g0997 1055 FunFam Calcium-transporting ATPase 33 93 - -
Lele12g0997 1055 PRINTS P-type cation-transporting ATPase superfamily signature 468 482 - -
Lele12g0997 1055 PRINTS P-type cation-transporting ATPase superfamily signature 794 806 - -
Lele12g0997 1055 PRINTS P-type cation-transporting ATPase superfamily signature 770 789 - -
Lele12g0997 1055 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Lele12g0997 1055 PRINTS P-type cation-transporting ATPase superfamily signature 299 313 - -
Lele12g0997 1055 PRINTS P-type cation-transporting ATPase superfamily signature 668 679 - -
Lele12g0997 1055 SUPERFAMILY Calcium ATPase, transduction domain A 252 347 IPR008250 -
Lele12g0997 1055 Pfam Cation transporting ATPase, C-terminus 855 1028 IPR006068 -
Lele12g0997 1055 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 474 680 IPR023299 GO:0000166
Lele12g0997 1055 FunFam Calcium-transporting ATPase 229 351 - -
Lele12g0997 1055 Coils Coil 57 77 - -
Lele12g0997 1055 Gene3D - 478 675 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0997 Lele-ChrLele12 17596050 17604502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0997 74 1052 Primary Pumps ATPases AT3G57330 67.278 0.0 1340