LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele12g0993	ATGCGACTGACGACGTTGTGGGTTGGTTCGGCCTTTGCCGAAAGCGAAGAGCAAGAGCTTGAAGTTGGCGAGCCAATAGACGAAGAAGGCAGTGATGCCTGTGAAATGTACAGAGGAAATGCTGAGAGGCAGGAAGAAGAAGAGGAAGATGATGGGAAGCACACAGATAAGTCTTATTGTGCCTTTTGGGACAATTTTGCTGATACAATACCAATAGCAGAAAGATATGCATATTACTCTGAAGTAGAATTGACTGTGTTAATTGGAAAAACCACATTCAAAGTTGCAGATTGGCTGGTGGACTTGACCAAAATCACCTCCCCTCCCAAACAAGGAGATGATCAAAGATTCCAAGTTCTTCCTGCAAATGCTGAGAGAGTTCTGGTTTGTGATGAAACTATGGCGGCAAACACAGTTCCTTCCTTCCTTGCAGTGATCTCTTTCTGTGGTTATTTTTGCAAAAGGATCGCCATCTATGTCTTTCTTCCTCGTGATTTCTTCGTAGACGTGGGCTCAGGCTCAGTCTTTCTCTCTCTCACCTCCTTCCTCCTCCTCAGACACAGCCCCATAAATGCTCTTCACCTTCTTCACCTTCTTCACCTTCCCCTCATCTTCATCTTCATATTCACGTCCTTCCCACCTTCTCTTCGCTTTCACTTCTCTCTCCTCAAACCCCAAACTTGTAAATCTTTGATGGGGTATTTCTCTTGCAGAGCTGAATCTGCCGTCTCAACCTCCAATTCCGTATCCCCATCTTCCTCCTCTGCTCAAAAACCTGAGAAACCCATCAAGATCCAACATTTCGACTATAGTGATCTCGAAGCCGCCACTAATGGCTTCTCCGACCGAAAGCTCCTAGGCAAAGGTAGTCATGGCTATGTCTACAAAGCCGTTGTTCGAGGCCGTCCCGTCGCCGTCAAGAGGCCATCGAGGGCTCACGGTGCTGTTCTTCGACGACCCAGTTCGTTGTCATCTTCTTCGTCGGCGCTGGAGATTACGAACGAGGTGGACAACGAGATCGACATCTTGTCGAAAATTCAGAGCCCGAGATTAGTCAATTTGGTGGGTTTCACGAACGATTCGAAAGATAGACTTCTGGTTGTGGAGTTCATGAGCAACGGAACCGTCTACGATGTTCTTCATTCTTCTGCACGACCACCCAACTGGGGTCGGAGAATCCGATTGGCTCTGCAAACTGCAAAAGCCATCGATACCCTCCACTCCTCAACCCCACCTGTAATTCACCGGGACATCAAATCTGCAAATGTTCTAATAGATCGAAACTTCAATGCTAGATTGGGAGATTTTGGGTTAGCCCTGCGAGGCCATGAAGATGATTATAGACTCAGGTCTACTCCTCCAGCAGGTACTATGGGATATCTTGATCCTTGTTATGTAACCCCAGATAACTTGAGTACAAAAACTGATGTTTTTAGTTTTGGGATTTTGCTGTTAGAGATAATTAGTGGGAGAAAAGCCATTGATATTACATATTCACCACCTTCCATTGTTGATTGGGCAATTCCTCTCATAAAGAAAGGGAAGTTATTGGCTGTTTATGATCCAAGAATTTTACCTCCTAAGGATCCAGTTGTTAGGAAGCAATTGGCTGTGATTGCTGCAAAATGTGTAAGGTCTTGCAGAGAAAGAAGACCTTCAATGAAGGACATAGTTGCTTGGCTTACTGGGTTATGTAAACTGGTTCCTCTTCATTCATGGAATGGTTTTAACAATCCCTGTATGATGATTGAGACTGTGGGACGCCCAATTGAAGCCAGAAATACCCATATGAGTCCAAGACAAGAAGAACAAGGTTTAGAAGGTGGAAATTTTGAAGCTTTAGAAGCTAGATTGTCTAAATCTGCAAATAGATATTCAAGGAGAGTGTATTCTGATCTGGGTTTCAGAAGCAACTTGATGGAACTTATGAACGACCCTGAGGAACCAGATAAATCTGGTTATAGAGTTTCTAGTTCAAGGTTTGGTAGTGGGAGATATTTCACAAGAGGTATAAATCTTTACAGGGCTTGTGGTACAGATAAAGATGCTTTTGGTTTGAGTGAAGGACAAATTGTTGTTGGTGGTGGTGGTGATGGGAACTCAAATTTGTGTCAAAAACAAGAAGGTAATTCTGGATCAGATTTGAATTCTCAAGCAGCTGAAGCTAATATTTCCTAG	2178	0.4394	MRLTTLWVGSAFAESEEQELEVGEPIDEEGSDACEMYRGNAERQEEEEEDDGKHTDKSYCAFWDNFADTIPIAERYAYYSEVELTVLIGKTTFKVADWLVDLTKITSPPKQGDDQRFQVLPANAERVLVCDETMAANTVPSFLAVISFCGYFCKRIAIYVFLPRDFFVDVGSGSVFLSLTSFLLLRHSPINALHLLHLLHLPLIFIFIFTSFPPSLRFHFSLLKPQTCKSLMGYFSCRAESAVSTSNSVSPSSSSAQKPEKPIKIQHFDYSDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRAHGAVLRRPSSLSSSSSALEITNEVDNEIDILSKIQSPRLVNLVGFTNDSKDRLLVVEFMSNGTVYDVLHSSARPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRNFNARLGDFGLALRGHEDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRILPPKDPVVRKQLAVIAAKCVRSCRERRPSMKDIVAWLTGLCKLVPLHSWNGFNNPCMMIETVGRPIEARNTHMSPRQEEQGLEGGNFEALEARLSKSANRYSRRVYSDLGFRSNLMELMNDPEEPDKSGYRVSSSRFGSGRYFTRGINLYRACGTDKDAFGLSEGQIVVGGGGDGNSNLCQKQEGNSGSDLNSQAAEANIS	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele12g0993	725	ProSiteProfiles	Protein kinase domain profile.	280	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0993	725	PANTHER	OS01G0253100 PROTEIN	250	564	IPR045271	-
	Lele12g0993	725	Pfam	Protein tyrosine and serine/threonine kinase	284	559	IPR001245	GO:0004672\|GO:0006468
	Lele12g0993	725	Gene3D	Phosphorylase Kinase; domain 1	260	370	-	-
	Lele12g0993	725	MobiDBLite	consensus disorder prediction	31	55	-	-
	Lele12g0993	725	SMART	serkin_6	280	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0993	725	FunFam	Serine/threonine-protein kinase-like protein At1g28390	250	370	-	-
	Lele12g0993	725	FunFam	Serine/threonine-protein kinase-like protein	371	574	-	-
	Lele12g0993	725	Gene3D	Transferase(Phosphotransferase) domain 1	371	569	-	-
	Lele12g0993	725	SUPERFAMILY	Protein kinase-like (PK-like)	254	561	IPR011009	-
	Lele12g0993	725	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	413	425	IPR008271	GO:0004672\|GO:0006468
	Lele12g0993	725	MobiDBLite	consensus disorder prediction	14	55	-	-
	Lele12g0993	725	ProSitePatterns	Protein kinases ATP-binding region signature.	286	307	IPR017441	GO:0005524
	Lele12g0993	725	MobiDBLite	consensus disorder prediction	702	725	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele12g0993	Lele-ChrLele12	17552730	17558207	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele12g0993	268	561	Receptor kinase-like Gene Family	AT3G59420	43.667	2.47e-69	242

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Lele12g0993		PK_Tyr_Ser-Thr	5e-35	CL0016