Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0956 ATGACCGATCCTCACTCTAATTTCTTCTCAAAGTGCTTCAACTTCGTCCCTCTACATCCCCACTTCTACCCTTCCAATTCCTACAGTAGTTTCTCCATTCAATTCCAACCACCTCCTCCTTCTCTTCCTTCTTCTTCCCCAAGAGAAGCCCTTCCTCTGCTGAACAATCTCAGTCTTCTCACAAACCAGCACAACAAGCAAAGAGCTCCTGATCATCATCATCAACAACCCTCAACCAATAAGGAACAACAACCATTAATTCTTCAAGACAAAGAAGCAGCTGAGACTAGTAATGATGAAACTGTGGCTGTTGCTCTACGCATAGGACTTCCCCCCATGACTGATACTAATACTACTAGCAGTAGCAGTAGTAATACCCAGATTAATTCAAAATCTTGCTCCTCCATTGAAACGACGACCATGGAGAAAGATGAAGTTGGTGGTGGTGCCGTTTCGGGACACTACTCTTTTGATCCGTTGAACAAAGGCCAGTACTGGATCCCAACTCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCCGTCTGCTCTAAAACCTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGAAAGGGACCAGATTCTCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGCTGTGCACCAAACTGCAAGCACAACATAGACCATCCAAGGGCAAGGCCTTTGAAGGATTTTAGAACCCTGCAAACTCATTACAAGAGGAAGCACGGAGCCAAACCCTACATGTGCAGAAAATGCAGCAAAGCCTTCGCTGTGAAAGGTGACTGGAGGACCCACGAGAAGAGCTGTGGCAAAATCTGGTATTGTCTCTGTGGTTCTGACTTCAAACACAAGAGATCTCTCAAAGACCACATTAGGGCTTTTGGCCATGGCCATGGCGGAGCTTTTCCTGCTGGCCTTAATGCTAATTGCTTGCAGGAAGAAGATGAAGCAAACTCTGAGATCGAACATGACGGAGACAACTCAATGTGA 1041 0.4582 MTDPHSNFFSKCFNFVPLHPHFYPSNSYSSFSIQFQPPPPSLPSSSPREALPLLNNLSLLTNQHNKQRAPDHHHQQPSTNKEQQPLILQDKEAAETSNDETVAVALRIGLPPMTDTNTTSSSSSNTQINSKSCSSIETTTMEKDEVGGGAVSGHYSFDPLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGAKPYMCRKCSKAFAVKGDWRTHEKSCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHGGAFPAGLNANCLQEEDEANSEIEHDGDNSM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0956 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 284 320 IPR013087 -
Lele12g0956 346 FunFam Zinc finger protein WIP2 233 315 - -
Lele12g0956 346 PANTHER ZINC FINGER PROTEIN WIP2 23 340 IPR043584 GO:0003700|GO:0010468
Lele12g0956 346 Pfam Zinc finger, C2H2 type 180 199 IPR013087 -
Lele12g0956 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Lele12g0956 346 MobiDBLite consensus disorder prediction 111 134 - -
Lele12g0956 346 FunFam zinc finger protein WIP2-like 179 202 - -
Lele12g0956 346 MobiDBLite consensus disorder prediction 65 84 - -
Lele12g0956 346 Gene3D Classic Zinc Finger 241 318 - -
Lele12g0956 346 MobiDBLite consensus disorder prediction 112 134 - -
Lele12g0956 346 Gene3D Classic Zinc Finger 179 202 - -
Lele12g0956 346 SUPERFAMILY beta-beta-alpha zinc fingers 248 284 IPR036236 -
Lele12g0956 346 SMART c2h2final6 180 202 IPR013087 -
Lele12g0956 346 SMART c2h2final6 290 313 IPR013087 -
Lele12g0956 346 SMART c2h2final6 264 284 IPR013087 -
Lele12g0956 346 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Lele12g0956 346 SUPERFAMILY beta-beta-alpha zinc fingers 173 202 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0956 Lele-ChrLele12 17285630 17288099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0956 1 339 C2H2 Transcription Factor Family AT3G57670 53.562 5.33e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele12g0956 zf-C2H2_6 9.3e-05 CL0361