Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0955 ATGTCTAAGAGGATTTGTAAGTTCTATGCCCGTGGAAAATGTTTCAGAGGGGAGCAATGTGGTTATTCTCATGACGAACAGGATACTCCAGTTGATATTTGCACATTCTATCAGAAAGGACACTGCTCTTATGGTAGTCAATGTAGATATAATCATGTCAAAGCTTCTCAGGCAAGTTCTGCATCATCTTCAGAAAATGGTCGGCAATCTCTGTCTTCAAAGTCTGTCATAGATCATACAACTCGAGGAAAATCAAGGTGGATGCCCAAGAATACAAAATATTCAAGCATTGGTCATCTTAAGCATCTGAATTCTCCAAAGAATGGTGATGTTGGTGAATCTAGTAATGTTATACCTTCAAAGATCTTTTGCACATATGCTGCAGCCAACTGTCCCTTAGGAAAAAAATGCTTGCGCATTCATGGAGACCAGTGTCTGTATTGTAGAAAGCACTGCTTGCATCCTGCTGACCGAAGGGAGAGACAGAATCATTTGAATTCTTGTGACAAAAAGGAAAAGTACAATCAGGCATTAAAAGATAGTCAAGAAATAGAGTGCAATATTTGCTGGGAGCGTGTTCTTTCAAAGCCAAAAGCATCTGAGTGTAAGTTTGGGATGCTTCCTGAATGCGACCATGCTTTCTGTTTATCCTGTATCAGGAATTGGCGAAACAGTGCCTCAAACTCTGAAATGGACATCTTTAAAATTGCTAATAACAATACGGTGAGGACTTGCCCTGTGTGTCGCAAGCTATCATATTTTGTGATTCCAAGTCCTATATGGTACTCCACAAAGGAAGAAAAGCAGGAAGTTATCGATGGCTACAAGGCCAATTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCATTAATGTGGAGACATGGTAGGCCACCACCTCCTCGCCGCTCCAGAGCACAAAATAATATGGATATGTATGAAATGATTGATATGCTCAGTGATTTTGATTTACAAAGTGGTGAATTCTATTCCATCATGCGGGACTCTGAGTTTTTAGAAGATATGGATCCTTACGAGATGATGGCAGTATCAGATATGCTGGCTTCTTCTGGTTCAGGACCTAGGTTTTTTGATGACGAAGATTCTGATGATGACGAAATGGGATTTTTTGAGATGGCTGCTCTATCAGCATCGCTGGATAACCCTTTTGAGGATTTTGACAGCGATGAGTTAAATCCTTCGCAAGCAGCGTTCTTATCAATGGTAATGCAATCTAACATGGAAGATGATAGTGAAGGGGAGGAGGATGACTAG 1335 0.4082 MSKRICKFYARGKCFRGEQCGYSHDEQDTPVDICTFYQKGHCSYGSQCRYNHVKASQASSASSSENGRQSLSSKSVIDHTTRGKSRWMPKNTKYSSIGHLKHLNSPKNGDVGESSNVIPSKIFCTYAAANCPLGKKCLRIHGDQCLYCRKHCLHPADRRERQNHLNSCDKKEKYNQALKDSQEIECNICWERVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSASNSEMDIFKIANNNTVRTCPVCRKLSYFVIPSPIWYSTKEEKQEVIDGYKANCKLIDCKHFDFGNGNCPFGARCFYKHTVKPGSLMWRHGRPPPPRRSRAQNNMDMYEMIDMLSDFDLQSGEFYSIMRDSEFLEDMDPYEMMAVSDMLASSGSGPRFFDDEDSDDDEMGFFEMAALSASLDNPFEDFDSDELNPSQAAFLSMVMQSNMEDDSEGEEDD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0955 444 PANTHER MAKORIN-RELATED 1 360 IPR045072 GO:0000209|GO:0061630
Lele12g0955 444 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Lele12g0955 444 SMART ring_2 186 248 IPR001841 -
Lele12g0955 444 SUPERFAMILY RING/U-box 176 255 - -
Lele12g0955 444 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Lele12g0955 444 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Lele12g0955 444 Pfam Zinc finger, C3HC4 type (RING finger) 186 248 IPR018957 GO:0046872
Lele12g0955 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 254 IPR013083 -
Lele12g0955 444 CDD RING-HC_MKRN 186 249 - -
Lele12g0955 444 Gene3D - 1 67 - -
Lele12g0955 444 SUPERFAMILY CCCH zinc finger 28 52 IPR036855 GO:0046872
Lele12g0955 444 Pfam RNA-binding, Nab2-type zinc finger 283 304 - -
Lele12g0955 444 Pfam RNA-binding, Nab2-type zinc finger 5 24 - -
Lele12g0955 444 Pfam RNA-binding, Nab2-type zinc finger 124 142 - -
Lele12g0955 444 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Lele12g0955 444 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Lele12g0955 444 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Lele12g0955 444 SMART c3hfinal6 278 306 IPR000571 GO:0046872
Lele12g0955 444 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Lele12g0955 444 MobiDBLite consensus disorder prediction 59 91 - -
Lele12g0955 444 ProSiteProfiles Zinc finger C3H1-type profile. 278 307 IPR000571 GO:0046872
Lele12g0955 444 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Lele12g0955 444 ProSiteProfiles Zinc finger RING-type profile. 186 249 IPR001841 -
Lele12g0955 444 MobiDBLite consensus disorder prediction 59 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0955 Lele-ChrLele12 17279469 17282470 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele12g0955 zf-C3HC4 1.6e-06 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0955 12 17279469 17282470 Lele12g0955 12 17279469 17282470 ECH
Lele09g0340 09 2431661 2434680 Lele12g0955 12 17279469 17282470 hybridization
Lele10g0324 10 2184141 2187105 Lele12g0955 12 17279469 17282470 hybridization