Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0954 ATGCATGCTTTTCGAAGCATGTTACTTGTCAGCCTATTGTTACAGGTTGAGATTTCATATGGAAAGAATTGGCTTATATATGATATGATTATAGTAGGATCGAAGCTGAGACGGATGGCTTCACTTCAGTTATTGACTATGGCCCTCTTCACAATTGAATTGATAATTCCTCCTCAAGAGATAGAAAAGACAAAGAATTTGTGGGAAACAATCAATGCTCTTGTTTCCTGTATATGTACGTTTTATCAGAAAGGAGTCTGTGCCTATGGTAGTCCCTGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCTATCGTCCATCTTCTTCTGCAAATGTACACCCCCTAAATATAGTTGTTAGTAGTAGAGTTACATCAAATGGGGCTGCTACAATTCCTGAGTTGTCTTCTCATAGTGGACCTTCCTTTCCTATTATTCCTGCATGGAATGGAGAATCTGAGTTTCATGTTCCTGATTGTTTTAACGCTTGGAATCCAGAATCTGGGGGTCAAGATTTTTTAGAGGACAGTGATGTCAGGGAATCCAGAATTGCCGATCCTTCAGAGCGTCCTATCTGTTCATTTGCTGCTGCTGGTAATTGTCCCAGGGAGGAGAAATGCCCTTTTATTCACGGAGATTTGTGTCCTACCTGTGGAAAGCACTGCTTACATCCTTTCCGACCTGAAGAACGAGAAGAACATATGATGAATTGCCAAAAAAAGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAACCCACAGCAGCTGAACGCAAGTTTGTGCTGCTATCTGAATGTGATCATCCCTTCTGCATATCTTGCATTAGGAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGTCGTAAGCTCTCTTACTTTGTCATTCCAAGTGTCATTTGGTACTCTACAAGTGAAGAAAAACAGGAAATCATCGACAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAGTGGAAACTGCCCTTTTGGTACTAGCTGTTTCTACAAGCATGCTTACCGAGATGGCAGACTTGAGCAAGTAGTTCTGAGGCATCTTGGGGCTGCAGATGGCAACACTATGATTGCTAAAGACATCAGGGTGATGCTCATACGTTCTAATAAGTATCAGTATGAGGGGAAGGGCAATGCCAGTGCATTGTGTGGGCAGCATAATAAAGTGCACCCTATGTTATATGATTATGAGCAGAAGGACGCGTACATGGCGGCAACTGTAATCTCAGTAAGCTCTCTAAAGAAAGCATCATACAGAACTGGAAGTGTGTATTTTTTGATGATGGTGTTATGA 1404 0.4195 MHAFRSMLLVSLLLQVEISYGKNWLIYDMIIVGSKLRRMASLQLLTMALFTIELIIPPQEIEKTKNLWETINALVSCICTFYQKGVCAYGSPCRYDHVKASREQSYRPSSSANVHPLNIVVSSRVTSNGAATIPELSSHSGPSFPIIPAWNGESEFHVPDCFNAWNPESGGQDFLEDSDVRESRIADPSERPICSFAAAGNCPREEKCPFIHGDLCPTCGKHCLHPFRPEEREEHMMNCQKKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFVLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTSEEKQEIIDSYKEKLKSIDCKHFDFGSGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNTMIAKDIRVMLIRSNKYQYEGKGNASALCGQHNKVHPMLYDYEQKDAYMAATVISVSSLKKASYRTGSVYFLMMVL 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0954 467 PANTHER MAKORIN-RELATED 78 387 IPR045072 GO:0000209|GO:0061630
Lele12g0954 467 ProSiteProfiles Zinc finger C3H1-type profile. 78 100 IPR000571 GO:0046872
Lele12g0954 467 Gene3D - 76 215 - -
Lele12g0954 467 Pfam RNA-binding, Nab2-type zinc finger 349 371 - -
Lele12g0954 467 Pfam RNA-binding, Nab2-type zinc finger 78 97 - -
Lele12g0954 467 ProSiteProfiles Zinc finger C3H1-type profile. 188 215 IPR000571 GO:0046872
Lele12g0954 467 SMART c3hfinal6 344 372 IPR000571 GO:0046872
Lele12g0954 467 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Lele12g0954 467 SMART c3hfinal6 189 214 IPR000571 GO:0046872
Lele12g0954 467 SMART ring_2 257 314 IPR001841 -
Lele12g0954 467 CDD RING-HC_MKRN 257 315 - -
Lele12g0954 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 213 IPR000571 GO:0046872
Lele12g0954 467 ProSitePatterns Zinc finger RING-type signature. 281 290 IPR017907 -
Lele12g0954 467 SUPERFAMILY RING/U-box 246 321 - -
Lele12g0954 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 321 IPR013083 -
Lele12g0954 467 Pfam Ring finger domain 256 315 IPR001841 -
Lele12g0954 467 ProSiteProfiles Zinc finger C3H1-type profile. 344 373 IPR000571 GO:0046872
Lele12g0954 467 ProSiteProfiles Zinc finger RING-type profile. 257 315 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0954 Lele-ChrLele12 17273929 17279276 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele12g0954 zf-RING_2 5.9e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0341 09 2436981 2439138 Lele12g0954 12 17273929 17279276 hybridization
Lele10g0325 10 2189401 2192979 Lele12g0954 12 17273929 17279276 hybridization