Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0950 ATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAGAAAAAAGAAAAATTAGAGGATTCAGAACCCATTAAAATTGTTTCAGGGCCTTTGACTTCTAATCTTTCCATTAGTAAAAAGAACTCTGCAGACTTGACGGCTAATACACAGAAAACATCCCAGGCGGTTTCAAGTGGCAAACTTGCATTCAGTTTAAAACAAAAGTCAAAGCTAGTACCTCCACCTGTTAAGTTAAGTGGAGATGAAGAAGAAGAAACCGATGATAGTAATGTTTCGAGTGATGTGCCTCTAAAACGACAAAAGTTGGGGCATGAAGATGGCATTGAGCGATCATCAAGACAATCTGATGATGCACCTCCTTCCCCACGTGATCCTACAGTGAAGAAAGTTGCTGAGAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCAGGGAATACACCTTTCAAGTTTTTATTTGACGAAAAATGTGCTGACTACAAATATTACGAATATCTACTAGCCCAGGAGGAAAAGGCTCTAGGGCAGCCTCGCGAATCACAGACATCACGTAATGGGGGTACAAGCTCATCATCTTCTAGACCAACCAATGTTCCTCGGAGATCATCTCAGCAGCGTTCAACTTACCAAATTCCCGCATCTGCTCTGTATGAAAGTTCTGAAGATCCTGGAGTTTATGGATCTTCAGGTCAAGCAGCATCAGGAGGAAGTGCTTATGAACCTGGTGGATCATCAAATGCTGATTCTTTGTCATTAATGGAGTACTATATGAAGAAAGCTGCCCAGGAAGAGAAGATGAAAAAACCTAAGCAATCTAAAGATGAAATGCCCCCTCCTGCATCTCTTCAATGCGATGCTTCTTCTAAAAAAGGTCATCACATGGGTGATTACATTCCCCAAGAAGAACTAGAGAAGTTCTTGGCTACCTGTAATGATGCGGCAGCGCAGAAAGCTGCCACGGAGGCTGTAGAGAAGGCTAAAATTCAGGCTGATAATGTGGGTCACAGGCTTTTGTCAAAAATGGGATGGAAAGAAGGTGAGGGTCTTGGCAGCTCCAGGAGTGGCATTTCAGATCCAATCATGGCTGGTAATGTTAAGATGAACAACTTGGGGGTTGGTGCAAACAACCCTGGGGAGGTGACTCCTGAAGACGACATATACGAGCAGTACAAAAAGAGGATGATGCTCGGCTATCGTTACAGACCTAATCCTCTGAACAATCCTCGCAAAGCTTATTATTGA 1272 0.4285 MERFKQLQQEQEKKKEKLEDSEPIKIVSGPLTSNLSISKKNSADLTANTQKTSQAVSSGKLAFSLKQKSKLVPPPVKLSGDEEEETDDSNVSSDVPLKRQKLGHEDGIERSSRQSDDAPPSPRDPTVKKVAEKLASFVAKNGRQFEDVTRQKNPGNTPFKFLFDEKCADYKYYEYLLAQEEKALGQPRESQTSRNGGTSSSSSRPTNVPRRSSQQRSTYQIPASALYESSEDPGVYGSSGQAASGGSAYEPGGSSNADSLSLMEYYMKKAAQEEKMKKPKQSKDEMPPPASLQCDASSKKGHHMGDYIPQEELEKFLATCNDAAAQKAATEAVEKAKIQADNVGHRLLSKMGWKEGEGLGSSRSGISDPIMAGNVKMNNLGVGANNPGEVTPEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0950 423 Pfam G-patch domain 341 384 IPR000467 GO:0003676
Lele12g0950 423 MobiDBLite consensus disorder prediction 141 160 - -
Lele12g0950 423 MobiDBLite consensus disorder prediction 183 255 - -
Lele12g0950 423 MobiDBLite consensus disorder prediction 1 23 - -
Lele12g0950 423 MobiDBLite consensus disorder prediction 91 128 - -
Lele12g0950 423 SMART G-patch_5 338 385 IPR000467 GO:0003676
Lele12g0950 423 ProSiteProfiles G-patch domain profile. 340 387 IPR000467 GO:0003676
Lele12g0950 423 MobiDBLite consensus disorder prediction 1 25 - -
Lele12g0950 423 MobiDBLite consensus disorder prediction 271 304 - -
Lele12g0950 423 SMART surpneu2 128 182 IPR000061 GO:0003723|GO:0006396
Lele12g0950 423 MobiDBLite consensus disorder prediction 185 225 - -
Lele12g0950 423 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 1 423 IPR040169 -
Lele12g0950 423 MobiDBLite consensus disorder prediction 56 128 - -
Lele12g0950 423 SUPERFAMILY Surp module (SWAP domain) 116 180 IPR035967 GO:0003723|GO:0006396
Lele12g0950 423 Coils Coil 1 21 - -
Lele12g0950 423 MobiDBLite consensus disorder prediction 234 255 - -
Lele12g0950 423 Pfam Surp module 130 179 IPR000061 GO:0003723|GO:0006396
Lele12g0950 423 ProSiteProfiles SURP motif repeat profile. 130 173 IPR000061 GO:0003723|GO:0006396
Lele12g0950 423 Gene3D Surp module 79 184 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0950 Lele-ChrLele12 17227768 17231656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0950 314 396 C2H2 Transcription Factor Family AT5G26610 38.636 4.17e-09 55.8