Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0941 ATGGTTCGCTCCAATGGTGTCAGGCTGATTCGATGGGCTGCTCGTCAATCTCTTGCCTCAAACTACCTTCGTGACGCAGCGAACGACATATACGAGGCTGTGTCCCGAAGAGGTTATAAGACAATGAATTCAGGGGTTTGCAAGCCATGTAGAATTATTGGAAGTTACACGTCAAATGTTGGAGATGCTGCTACTATGAAGAACCGGTTACTCTTGGGAGCAATGAATACATATTGGGGCACAACTAGATCCATTCATGGCACGGCTTCATTGGCAAGAGATTATTATGATGTTCTTGGTGTGAATAAGAATGCAAGCGCATCTGAAATAAAGAAAGCATATTATGGGCTTGCAAAGATGCTCCATCCTGACACAAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAGCGGCAACAGTATGATCAGGTTGGCCATGATGCCTACGTAAATCAACAAAGCAATGGTTTTGGAGGAGATGCTGGTTTCAATCCATTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGGACTTCTTTCATCAAAATATTGGTGGAGAGGATGTCAAGACCTTTGTTGAACTATCATTTATGGAAGCTGTTCAAGGATGCACCAAAACTGTGTCATTTCAAACCGATGTGCTTTGTAATACCTGTGGTGGTAGTGGCGTTCCTCCTGGAACAAGACCTGAAACTTGCAAACGCTGTAAAGGGTCTGGTGTGAATTATGTACAAGCTGGCATATTCAGGATGGAGAGTAGCTGCACAGCATGCAAAGGCACTGGAAAAATTGTATCGAGCTTCTGCAAGTCTTGCAGGGGTGCAAAGGTTGTCAAAGGAACAAAGTCCGTCAAGTTGGATTTCACGCCTGGGATAGACAACAATGAGACTATAAAAGTTTATAGAAGTGGTGGAGCAGACCCTGATGGGGATCACCCAGGTGATCTTTACGTGATTGTCAGGGTTAGAGAAGACCCTGTTTTCCGAAGAGAAGGATCTGATATTCATGTGGATGCTGTCTTAAGCATCACGCAGGCAATTTTGGGAGGAACCATTCAGGTCCCCACTCTTACAGGAGATGTTGTTCTGAAGGTTCATCCTGGAACCCAACCCGGTCAGAAGGTGGTGTTGAAAAAGAAAGGGATCAAAACCAAAAATTCGTGGACATTTGGGGACCAGTATGTTCATTTTAATGTCAGCATCCCAACAAACCTGACACAGAGACAGCGAGAGTTAATAGAGGAGTTTGCCAAGGTAGAGCAAGGGGAAGATGTTAAACAGAGAGCTGCATCAGGTTCTGGATGA 1347 0.4402 MVRSNGVRLIRWAARQSLASNYLRDAANDIYEAVSRRGYKTMNSGVCKPCRIIGSYTSNVGDAATMKNRLLLGAMNTYWGTTRSIHGTASLARDYYDVLGVNKNASASEIKKAYYGLAKMLHPDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDAYVNQQSNGFGGDAGFNPFEQIFRDHDFVKDFFHQNIGGEDVKTFVELSFMEAVQGCTKTVSFQTDVLCNTCGGSGVPPGTRPETCKRCKGSGVNYVQAGIFRMESSCTACKGTGKIVSSFCKSCRGAKVVKGTKSVKLDFTPGIDNNETIKVYRSGGADPDGDHPGDLYVIVRVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVHPGTQPGQKVVLKKKGIKTKNSWTFGDQYVHFNVSIPTNLTQRQRELIEEFAKVEQGEDVKQRAASGSG 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0941 448 Gene3D - 337 445 - -
Lele12g0941 448 CDD DnaJ 94 148 IPR001623 -
Lele12g0941 448 SUPERFAMILY HSP40/DnaJ peptide-binding domain 202 337 IPR008971 GO:0006457|GO:0051082
Lele12g0941 448 Pfam DnaJ domain 94 156 IPR001623 -
Lele12g0941 448 Hamap Chaperone protein DnaJ [dnaJ]. 91 442 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele12g0941 448 PRINTS DnaJ domain signature 114 129 IPR001623 -
Lele12g0941 448 PRINTS DnaJ domain signature 96 114 IPR001623 -
Lele12g0941 448 PRINTS DnaJ domain signature 131 151 IPR001623 -
Lele12g0941 448 PRINTS DnaJ domain signature 151 170 IPR001623 -
Lele12g0941 448 CDD DnaJ_zf 230 290 IPR001305 GO:0031072|GO:0051082
Lele12g0941 448 Pfam DnaJ central domain 230 290 IPR001305 GO:0031072|GO:0051082
Lele12g0941 448 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 217 293 IPR036410 -
Lele12g0941 448 ProSiteProfiles dnaJ domain profile. 94 159 IPR001623 -
Lele12g0941 448 CDD DnaJ_C 201 419 - -
Lele12g0941 448 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 50 439 - -
Lele12g0941 448 FunFam Chaperone protein dnaJ 1, mitochondrial 337 443 - -
Lele12g0941 448 FunFam Chaperone protein dnaJ GFA2, mitochondrial 91 202 - -
Lele12g0941 448 Pfam DnaJ C terminal domain 206 416 IPR002939 -
Lele12g0941 448 FunFam Molecular chaperone DnaJ 222 295 - -
Lele12g0941 448 ProSitePatterns Nt-dnaJ domain signature. 136 155 IPR018253 -
Lele12g0941 448 SUPERFAMILY HSP40/DnaJ peptide-binding domain 341 427 IPR008971 GO:0006457|GO:0051082
Lele12g0941 448 Gene3D - 230 290 - -
Lele12g0941 448 Gene3D - 204 332 - -
Lele12g0941 448 ProSiteProfiles Zinc finger CR-type profile. 217 295 IPR001305 GO:0031072|GO:0051082
Lele12g0941 448 SUPERFAMILY Chaperone J-domain 93 194 IPR036869 -
Lele12g0941 448 SMART dnaj_3 93 151 IPR001623 -
Lele12g0941 448 Gene3D DnaJ domain 91 203 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0941 Lele-ChrLele12 17163777 17168772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0941 94 158 Miscellaneous Gene Families AT1G16680 38.806 4.73e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0941 12 17163777 17168772 Lele12g0941 12 17163777 17168772 ECH
Lele09g0357 09 2535300 2540137 Lele12g0941 12 17163777 17168772 hybridization
Lele10g0337 10 2281589 2286776 Lele12g0941 12 17163777 17168772 hybridization