Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0939 ATGGCTAATCAAAATCAGAAGAAGCCACATGAAGATTACTCTCTTAAGGAAACAACTCCAAACATTGCTGCTGGAAGAGTCATAACTGGAGACAGGCTTCCCACTGCATTTGACCTTGTAGAGAAAATGCACTTTCTCTTTGTAAGAGTGGTTAAAGCTAGAAACTTGCTAACAAGTACTACCACTAAATGCAACACTTGCAATCCCTGTGTTGAAGTGAAGCTTGGAAGTTTCATAGGAACAACCCGAGTTTTCCCCAAAACCTCGAATCCGGAATGGAACCAAGTCTTCGCTTTCGCGAAAGATCGAATTCAGGAACCGGTTCTAGAAATCTTGGTGAATGACAAGGTAAATGGAACTACCAATTCTGAAATCATGGGAAAAGTTTTATTCAGTGTATCTGATATTCCCATAAGAGTTCCACCAGATAGCCCATTTGCCCCACAATGGCATAGACTTGAAGAAAAAAAAGGAGTGAAGCTTAAAGAAAAATTAATGCTATCTATTTGGATGGGAACTCAAGCAGATGAAGCTTTTCCAGATGCTTATCACTCTGATGTATCAACATCAATTATCAGTGATAACATTGCTTATAATAGATCGAAAGTTTACGTTTCGCCTCGGCTATGGTATTTAAGAGTGAATGTAATTCAAGCTCAGTATTTGCTAGTAACCAAAAAGAATGTGAACTCAGAAATCTCCATTCAAGCTATTCTTGGGAATCTCGCTCTCAGAAGCCGTCCTTTGAAGATTAGTCCAAACCCCATTTGGAATAAGGATATTTTGTTTGTCGCAGCAGAACCTTTTGATGAATCTCTGGTTCTGAGCTTAGAGCAGAGGAATTTGAATTCGAGTTCATGTATTCATGAAAAAATGGGAACTTGTGTGGTTCCATTGAAGAATGTAGAGCAGAGAATAGATTCTGCAACACCTTGTAGCAAATGGTACAACCTTGAACAACAACAACAGGCCAATAAGAAGGTTCCTCAAGAGGGATGTGAGAAAACTAATAATAAGGTCAAAGAAGCTGAAAAAGAAGATCAGAAAGAGCAAGTTAACAAGTTTTCAATTCATGATCCTTGCACTGTCATAACAATAGCAGTGTTTGACAATGGCCATCGTCAAACACAGAAAAATGCAGAATCACAAGTAGATAAGAGAATTGGGAAGGCGATATATATTCTTCACACAGCCAATAAAGCTTCTCCCATTCCCGGAGTGTTGAAGGTTTCTGAAGAACCAGAGGAAGTAGGCACGGTTGAAGTAGTAGCAATGGCTCCCAAGCAGAGAACACCAAAGGTGAGCAGAAATCCTGAATTGATTAGAGGGATTGGTAAGTATTCGAGGTCGAAGATGTATCACAAGAGAGGCCTCTGGGCCATCAAGGCCAAAAATGGCGGCGTTTTCCCTCGTCACGATGCGAAGCCCAAGCCTGAAGCTCCTGAGGAGAAACCTCCCAAGTTTTATCCCGCCGACGATGTCAAGAAGCCCTTGGTCAACAAGCACAAGCCGAAGCCTACTAAACTCAGGACTAGCATTACTCCCGGTACTGTGCTGATTCTTCTTGCCGGAAGATTCAAGGGAAAGAGAGTCGTTTTCCTGAAGCAGCTTCCTTCTGGGTTGCTCCTTGTTACTGGTCCATTTAAGATTAATGGAGTTCCATTGAGGCGTGTTAGCCAATCTTATGTGATCGGCACCTCCACAAAGGTTGATATTTCTGGAGTCAATGTTGAGAAATTTGACGACAAGTACTTTGCCAAGAAGGCTGAGAAGAAGAAGAAAAAGGGAGAAGGAGAGTTTTTTGAGGCTGAAAAAGAGGAGAAAAATGTCATCCCCCAAGAGAAAAAGGACGACCAGAAAACCGTGGATTCTGCTTTGTTAAAGGCCATTGAGAGCGTCCCAGAATTTAAGGCTTATTTGGGTGCAAGGTTCTCTCTCAAGGCTGGCATGAAACCTCATGAACTAGTATTCTAA 1974 0.4169 MANQNQKKPHEDYSLKETTPNIAAGRVITGDRLPTAFDLVEKMHFLFVRVVKARNLLTSTTTKCNTCNPCVEVKLGSFIGTTRVFPKTSNPEWNQVFAFAKDRIQEPVLEILVNDKVNGTTNSEIMGKVLFSVSDIPIRVPPDSPFAPQWHRLEEKKGVKLKEKLMLSIWMGTQADEAFPDAYHSDVSTSIISDNIAYNRSKVYVSPRLWYLRVNVIQAQYLLVTKKNVNSEISIQAILGNLALRSRPLKISPNPIWNKDILFVAAEPFDESLVLSLEQRNLNSSSCIHEKMGTCVVPLKNVEQRIDSATPCSKWYNLEQQQQANKKVPQEGCEKTNNKVKEAEKEDQKEQVNKFSIHDPCTVITIAVFDNGHRQTQKNAESQVDKRIGKAIYILHTANKASPIPGVLKVSEEPEEVGTVEVVAMAPKQRTPKVSRNPELIRGIGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKPEAPEEKPPKFYPADDVKKPLVNKHKPKPTKLRTSITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVSQSYVIGTSTKVDISGVNVEKFDDKYFAKKAEKKKKKGEGEFFEAEKEEKNVIPQEKKDDQKTVDSALLKAIESVPEFKAYLGARFSLKAGMKPHELVF 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0939 657 MobiDBLite consensus disorder prediction 469 509 - -
Lele12g0939 657 Pfam C2 domain 210 318 IPR000008 -
Lele12g0939 657 Pfam C2 domain 46 136 IPR000008 -
Lele12g0939 657 CDD KOW_RPL6 505 657 IPR041997 -
Lele12g0939 657 Gene3D C2 domain 35 171 IPR035892 -
Lele12g0939 657 ProSiteProfiles C2 domain profile. 27 151 IPR000008 -
Lele12g0939 657 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 210 321 IPR035892 -
Lele12g0939 657 SMART C2_3c 211 311 IPR000008 -
Lele12g0939 657 SMART C2_3c 45 145 IPR000008 -
Lele12g0939 657 Coils Coil 333 353 - -
Lele12g0939 657 FunFam 60S ribosomal protein L6 511 595 - -
Lele12g0939 657 CDD C2B_MCTP_PRT_plant 45 173 - -
Lele12g0939 657 Pfam Ribosomal protein L6e 550 657 IPR000915 GO:0003735|GO:0005840|GO:0006412
Lele12g0939 657 SUPERFAMILY Translation proteins SH3-like domain 511 600 IPR008991 -
Lele12g0939 657 MobiDBLite consensus disorder prediction 469 500 - -
Lele12g0939 657 ProSiteProfiles C2 domain profile. 188 316 IPR000008 -
Lele12g0939 657 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 45 186 IPR035892 -
Lele12g0939 657 Pfam Ribosomal protein L6, N-terminal domain 427 485 IPR005568 GO:0003735|GO:0005840|GO:0006412
Lele12g0939 657 Gene3D C2 domain 193 329 IPR035892 -
Lele12g0939 657 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 5 330 - -
Lele12g0939 657 Gene3D - 511 595 IPR014722 -
Lele12g0939 657 Coils Coil 586 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0939 Lele-ChrLele12 17152781 17158352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0939 425 657 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 84.120 1.31e-122 362