Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0924 ATGGAGCTTGGTTTGAGCTTGGGAGATCATGCTTCAAAGCCTTCTGAAGCTTCCAGCCTTCTGGGATTAGGCTTCAGTACCACTTTATCCATTGGTTCTTTCTGTAACAAAGAGTCAAATCAAGAAGAAGAAGAAGAAGAAGAACCGGAAGAAAAAGAAGCAAAAAAGCAAAAGGGAAAACTGAGTATTGAAGACCGCGAAGATAGAGCTGAATATATTCAGCTTGATCTTCTCCCTCACACTCCAGTCGCTGTTTCTCGCACTAACCCACCTTCTCAAATCTCATTTCCATGGCCTCCTTCTGAAAATGGAAGTTGTTCTAGGGGTGTTGATATGAATAGATTGCCGCCGCCGTTGCCGGCGGCGGAGGAAGATGAGGCGGCGATGTCGTCGTCTCCGAACAGCGCTGCCTCATCGTTTCAGATGGATCTCAGCGTGTTTAACAGAGGAGGGAGTAGTATCAGTGGTTGTAAGAGGGATTATGACGGAGACTTATATTATGATCGAAGGGCTGCTTCTTCAAGAGCAAGCGATGAAGATGACAACGTTGGTAGTACGAGGAAGAAGCTAAGGCTGTCCAAAGAACAATCTGCTTTTCTCGAAGACAGCTTCAAAGAACACAGCACCCTTAACCCAAAACAGAAACTTGCCCTTGCAAAACAGCTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAGGTAGATTGTGAGTACTTGAAGCGGTGCTGTGAGACACTAACTGAAGAGAACAGAAGGCTTCACAAAGAGCTTCAAGAACTGAGAGCTTTGAAGACTAATTCAAATCCATTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGTGCCTCTTGTGAGCGAGTCGCCACCAACAATTCCACCTCTACCACTGCCACAACCACCACCATCGCTGCCGCCACCACGGTTGCTACTTCATCTGCGAGTCCTTCTGCCACCAAAGTCGCTGAAACAAGAGCCGCCATTGAACCTGCGTCATCATCCAAAGCCATTGGATTCCCTCTAAGCAAACCAAATTTCTATCCTTTTGCTCACACCAAAACCCACCATCCCCACCCATCCACACCCTCTTGA 1131 0.473 MELGLSLGDHASKPSEASSLLGLGFSTTLSIGSFCNKESNQEEEEEEEPEEKEAKKQKGKLSIEDREDRAEYIQLDLLPHTPVAVSRTNPPSQISFPWPPSENGSCSRGVDMNRLPPPLPAAEEDEAAMSSSPNSAASSFQMDLSVFNRGGSSISGCKRDYDGDLYYDRRAASSRASDEDDNVGSTRKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNSNPFFMQLPATTLTMCASCERVATNNSTSTTATTTTIAAATTVATSSASPSATKVAETRAAIEPASSSKAIGFPLSKPNFYPFAHTKTHHPHPSTPS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0924 376 ProSiteProfiles 'Homeobox' domain profile. 183 243 IPR001356 GO:0003677
Lele12g0924 376 Coils Coil 256 279 - -
Lele12g0924 376 Pfam Homeodomain 187 241 IPR001356 GO:0003677
Lele12g0924 376 SUPERFAMILY Homeodomain-like 174 244 IPR009057 -
Lele12g0924 376 Pfam HD-ZIP protein N terminus 100 140 IPR006712 GO:0005634
Lele12g0924 376 MobiDBLite consensus disorder prediction 51 67 - -
Lele12g0924 376 CDD bZIP 236 275 - -
Lele12g0924 376 SMART halz 243 287 IPR003106 GO:0006355|GO:0043565
Lele12g0924 376 Pfam Homeobox associated leucine zipper 243 277 IPR003106 GO:0006355|GO:0043565
Lele12g0924 376 ProSitePatterns 'Homeobox' domain signature. 218 241 IPR017970 GO:0000981|GO:0006355
Lele12g0924 376 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 29 320 - -
Lele12g0924 376 MobiDBLite consensus disorder prediction 85 108 - -
Lele12g0924 376 CDD homeodomain 187 244 IPR001356 GO:0003677
Lele12g0924 376 MobiDBLite consensus disorder prediction 83 136 - -
Lele12g0924 376 Gene3D - 191 241 - -
Lele12g0924 376 SMART HOX_1 185 247 IPR001356 GO:0003677
Lele12g0924 376 MobiDBLite consensus disorder prediction 34 67 - -
Lele12g0924 376 FunFam Homeobox-leucine zipper protein 18 172 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0924 Lele-ChrLele12 17067051 17068475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0924 108 300 Homeobox Transcription Factor Family AT3G60390 54.460 5.82e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele12g0924 Homeodomain 2e-15 CL0123