Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0922 ATGGAGCTTGATTTGAACGAGGAGCCCTTGTACCAAACCCCAACCTCAGTGATTGGATTTGATTCGATATCGAACGAGCTAGAATCAACGCATGAACATATAGAAGAGCGCATCAGGCAACTTGAAGCGGTAACCCTGAGAGCTAGGCTGCGTCAGGGGTGGCGATGGGGTCATGATTCGGTTCAAATGAATAACGTTATCACAGATATGATGATGACACCTAGTGCTCATGATGAACACAGGATGCCCCAAGAAGATGTTGGTGTCGCAGTACCGGAAGGGATAGTTGTATTAGCGGAATTGACAACAACTAACGCTCAAAATGAAGGTAGCTTGCCTAGGGAAGAAGCTGGTGTAGACCAAGAAAGAACAGTCAACAATAGGAAAACGGGCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTGGGCATGGATCCATATATAGATGATTCAGTGAGCAACACTGGGAATTTTTTTGATTGTAATATCTGTCTGGACATGGCAAGGGATCCGATTTTGACATGCTGTGGTCACCTATTCTGTTGGCCATGCTTCTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAGTGCCCTGTTTGTAAGGGAGAGGTTGCTGAAACAGGCATTATTCCAATATACGGAAATAAAGATGACTCTAGCAACCGTCAGTTGGAACTGAAAGAAAGTGGTTTCACTATCCCTCCTCGACCCCAAGCACGTAGAATTGAGAGTCTCAGACAACAGCTCATAAGCAGGGGAGCATCATCTTCTACAATCCATGAGATTAGGCAATTTATTGGTTCAACTGCAACTGATAGAACTCGTTTTTCTGTCAACCAACCTCACCATTCGCAGCCCCAAGCATTACATGGCTAG 882 0.4444 MELDLNEEPLYQTPTSVIGFDSISNELESTHEHIEERIRQLEAVTLRARLRQGWRWGHDSVQMNNVITDMMMTPSAHDEHRMPQEDVGVAVPEGIVVLAELTTTNAQNEGSLPREEAGVDQERTVNNRKTGKRNSSHLVAKALGMDPYIDDSVSNTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSYAYSNVRECPVCKGEVAETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQARRIESLRQQLISRGASSSTIHEIRQFIGSTATDRTRFSVNQPHHSQPQALHG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0922 293 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Lele12g0922 293 Coils Coil 24 44 - -
Lele12g0922 293 SUPERFAMILY RING/U-box 151 211 - -
Lele12g0922 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 266 IPR013083 -
Lele12g0922 293 SMART ring_2 162 202 IPR001841 -
Lele12g0922 293 CDD RING-HC_AtRMA_like 160 204 - -
Lele12g0922 293 Pfam zinc-RING finger domain 162 203 IPR001841 -
Lele12g0922 293 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 266 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0922 Lele-ChrLele12 17051714 17052595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0922 116 251 C3H Transcription Factor Family AT3G58030 45.255 6.55e-34 126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0383 09 2674775 2676127 Lele12g0922 12 17051714 17052595 hybridization
Lele10g0357 10 2408294 2409175 Lele12g0922 12 17051714 17052595 hybridization