Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0917 ATGGGCCCCATCTCCCCTCCCCAATTCGCTCCATTACCATTTACGACAACACCTTACCGACTCTCGACGTCACGTGTTGAGCGAGAGAGAGAGGGAGGGAAGGTAGGAGGAAGGAAGCAGAAGGGAGGGAAGGGCAGAAGAACTGAGGAGGGAGAGGGAGACATGTCCTCCACCACCGCGACGGGCACCGCTGCCGACATTACCGTCGTGCCAGAGACGGTGGAAGCAGAAATGAAGACGTACTGGTGTCACGAATGCGACATGAGTGTTGCTCTGTCTTCCTCTTCTTCGTCTTCAACTTCGTCGTCGACTCTTCTCTGCCCTCATTGCCACACTCACTTCCTCGAACTCATGGACTCCCCTTTCTTCCCTCAATCAGATTCTCATTCATTTCCCTCTTCGTTTTCCCTCTTCGACACTCCCTACCTCCAGCACTTAATCCAGAACCACCTCCTTCCCTCGGACAACGACGACCACGACCACGGTGAACTTATGTACGACGACGTTTTCGAAGACCCGTTACCTCTGCTCTCCACACTACCAAATACCACCACCAAATCTTGCTCTGATTCTGTACCCACTATAATAGTTACATCTTCCTTGCTTTCACAGCTTGACCCTGGAGGGGTTCTTTGTGCGGTTTGTAAGGACCCAATTGGGGTTGATGTGCAGGCTAAGCAGCTTCCGTGTAAGCATTTGTACCACTCCGATTGCATTACGCCGTGGCTGGAGAACCACAATTCTTGCCCGCTTTGTCGTTTTCAGCTGGTCGGTGAACAGGAGGAGAAGGAGGGGGTTTCTCAGGCGAGGAGGATCAGAAGGCAGTTGAGAACAGCCATGATGAGGCTGTCTGAATTGATGGAAGAGGAGGACGATTTCTATGGGTTGAGGACCACGCTGAGTCACATTGCTAGTAGACACCGCGTTCTTTCTTCTGCTATTTCGGGTCACAGGAATGATGAGATCCCTTCTGATTCCCTGGCTTCCCCTCGGATGACGGAAGCAGATTCTGTATCTGCTGGCGGCAATGCTAATTCGGAGTCTCTTTCGAGCTGA 1056 0.5218 MGPISPPQFAPLPFTTTPYRLSTSRVEREREGGKVGGRKQKGGKGRRTEEGEGDMSSTTATGTAADITVVPETVEAEMKTYWCHECDMSVALSSSSSSSTSSSTLLCPHCHTHFLELMDSPFFPQSDSHSFPSSFSLFDTPYLQHLIQNHLLPSDNDDHDHGELMYDDVFEDPLPLLSTLPNTTTKSCSDSVPTIIVTSSLLSQLDPGGVLCAVCKDPIGVDVQAKQLPCKHLYHSDCITPWLENHNSCPLCRFQLVGEQEEKEGVSQARRIRRQLRTAMMRLSELMEEEDDFYGLRTTLSHIASRHRVLSSAISGHRNDEIPSDSLASPRMTEADSVSAGGNANSESLSS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0917 351 MobiDBLite consensus disorder prediction 316 351 - -
Lele12g0917 351 SUPERFAMILY RING/U-box 204 256 - -
Lele12g0917 351 SMART ring_2 212 252 IPR001841 -
Lele12g0917 351 Pfam Ring finger domain 212 253 IPR001841 -
Lele12g0917 351 Coils Coil 269 289 - -
Lele12g0917 351 MobiDBLite consensus disorder prediction 330 351 - -
Lele12g0917 351 Pfam zinc-ribbon 80 118 IPR039525 GO:0061630
Lele12g0917 351 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Lele12g0917 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 131 256 - -
Lele12g0917 351 MobiDBLite consensus disorder prediction 1 63 - -
Lele12g0917 351 MobiDBLite consensus disorder prediction 23 53 - -
Lele12g0917 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 270 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0917 Lele-ChrLele12 17022180 17023235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0917 75 325 C3H Transcription Factor Family AT3G60080 35.762 2.64e-31 118