Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0901 ATGCAAGGAAGCGGACAAATAGCGGTGCCTCCAGGGTTCAGGTTCCACCCTACAGATGAGGAGCTTCTTTACTATTATCTAAGGAAGAAAGTTTCTTTTGAAGCCATTGACCTCGATGTCATCCGTGAAGTTGATCTCAACAAACTTGAGCCTTGGGATCTCAAAGAAAAATGTAGGATTGGATCAGGACCTCAGAATGAGTGGTACTTCTTCAGCCACAAGGACAAGAAGTACCCGACCGGAACACGAACGAACCGGGCAACGACGGCCGGATTCTGGAAAGCAACGGGGAGGGACAAGGCCATATACCTGAGCAACTCCAAGAGGATAGGGATGAGGAAAACCCTAGTGTTCTACACTGGGCGTGCTCCTCACGGCCAAAAGACTGACTGGATCATGCACGAGTACCGCCTAGACCAAGACGATGCCGATCAGCTTCAGGAAGATGGGTGGGTGGTGTGCAGGGTATTCAAGAAGAAGAACTTTATCAGAGGTTTTCAACCAGAGCTGGAGGAAGATGAGCAGATAATGAGCCACATGGCGTCAACAAGTACTGCTTCTAATAATTGCATGAAGGTACTTGAACCATTAAAACACCGCCACCACCTTCATCATCATCATCAAGGACTTGTTCAACCTTATTATGATGACCACCATAGTAATAATAATCATAGTAACTATGATAATAATAATAATAATTATTATAGTAGCTGCTTTAATGCGTCCATGCACCTACCACAGTTGTTCAGCCCAGAATCTGCAGTACCACCAACCCTTCCTTCTGCAACCTCTTCATCCCCGTCGTCGTCGTCGACGATGAACCCCATGGACGTCCTTCACTGTTCTCACAACTTGCTTAGGCTCGCTTCGACTTCTTCTTCTCATTCTCCTGGAGGACTCATTAGTAATCTCATGCATCAACAAGGTGATCAGAGACTCAATAATGGAGACTGGTCCTTCTTGGACAAGCTGCTTTTAGCTTCACAACAACAACAACCTGTGGTTCCTCTTGTGGGGGCTTCTTCTCCTCCTCCTCCTTCATCCCACAAGTTCCCTTTTCATTACCTGGCTTGTGATCAGAGTGACCTCATGAAGTAA 1098 0.4645 MQGSGQIAVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDQDDADQLQEDGWVVCRVFKKKNFIRGFQPELEEDEQIMSHMASTSTASNNCMKVLEPLKHRHHLHHHHQGLVQPYYDDHHSNNNHSNYDNNNNNYYSSCFNASMHLPQLFSPESAVPPTLPSATSSSPSSSSTMNPMDVLHCSHNLLRLASTSSSHSPGGLISNLMHQQGDQRLNNGDWSFLDKLLLASQQQQPVVPLVGASSPPPPSSHKFPFHYLACDQSDLMK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0901 365 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Lele12g0901 365 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Lele12g0901 365 FunFam NAC domain-containing protein 18 163 - -
Lele12g0901 365 MobiDBLite consensus disorder prediction 252 273 - -
Lele12g0901 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 231 - -
Lele12g0901 365 Pfam No apical meristem (NAM) protein 10 138 IPR003441 GO:0003677|GO:0006355
Lele12g0901 365 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Lele12g0901 365 MobiDBLite consensus disorder prediction 254 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0901 Lele-ChrLele12 16911669 16912960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0901 1 365 NAC Transcription Factor Family AT1G79580 50.498 1.77e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele12g0901 NAM 5.7e-38 No_clan