Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0883 ATGGCACCGATGAGTCTTCCACCTGGTTTTCGGTTCCATCCAACAGATGAAGAACTCGTTGCTTATTACTTGGAAAGAAAAATCACAGGCCGTTCTATAGAGCTTGAAATCATCCCTGAAGTTGATCTTTACAAATGCGAACCATGGGATTTGCCAGATAAGTCGTTCTTGCCAAGTAAGGATATGGAGTGGTACTTTTACAGTCCAAGAGATAGAAAGTATCCAAATGGGTCAAGAACAAACAGAGCAACAAGAGCTGGATACTGGAAAGCCACAGGCAAAGATAGAGCAGTTCACTCTCAGAAACGCCAAGTTGGGATGAAGAAGACGTTGGTTTATTACAGAGGAAGGGCCCCACATGGCATTAGAACCAACTGGGTCATGCATGAGTATCGTCTCACTGATTCACTCCCTCCTCCTCCTTCTTCCTCCTTCTCCTTGAAGGATTCTTATTCATTGTGTCGTGTTTTCAAGAAGTCGATCCAAATCCCAAAACCAAAAGAAGATCAGGAGGAAGAAGAAACAGAAATTACTGCTCGTAAGAATAAGGGATCAAAATCTGACATGAGGGTTGCATCTGAAGAACAAGGATTAAGAGAGGATTCAAGCGGCTTCGAGGTTTCTTTAGAAAAGGAAATTGTAGATGAGAAAACTATCGTCAATACTAATAGTAATAATAATCATGATGGTGCTGACAATTCTCATAGTAAATTTCCAGCTGTTGATAATGCTGCTTCATCTTCGGATCTCACTCAAGGGACCCCCACTACTGATAATGATTTTCAAGCTCAAATTGCTTCCGATGAAGCAAATAGTGCTGCTAATCCTTATTCCCTTGGAATTGACTATTCATCAAATCTATTTCAGGAAATAGAGCTACAAATGTATGCTGGCATGCACTATCAACTTCCATATCCGCCATTCGAGCTTGAAGATTTCCCTCAAACAAGTTTTGTGGAGACGAAGCCATTAATGAAGGCAGCAGATCAGCAAATGATGATGATGAATGAATGCAACATGGGGTATGATCACAACAAATACAAGAGCTGTACAACAATGAGTGGGACTCTAGAAGAGATCATCTCCTTGTGTTCGTCGTCTCATCATCAAGACAATAATAACTCTTTGCCTCTCTCTATGCTAGATTGA 1149 0.4099 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRAVHSQKRQVGMKKTLVYYRGRAPHGIRTNWVMHEYRLTDSLPPPPSSSFSLKDSYSLCRVFKKSIQIPKPKEDQEEEETEITARKNKGSKSDMRVASEEQGLREDSSGFEVSLEKEIVDEKTIVNTNSNNNHDGADNSHSKFPAVDNAASSSDLTQGTPTTDNDFQAQIASDEANSAANPYSLGIDYSSNLFQEIELQMYAGMHYQLPYPPFELEDFPQTSFVETKPLMKAADQQMMMMNECNMGYDHNKYKSCTTMSGTLEEIISLCSSSHHQDNNNSLPLSMLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0883 382 MobiDBLite consensus disorder prediction 164 207 - -
Lele12g0883 382 MobiDBLite consensus disorder prediction 219 259 - -
Lele12g0883 382 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lele12g0883 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 231 - -
Lele12g0883 382 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Lele12g0883 382 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Lele12g0883 382 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Lele12g0883 382 FunFam Nac domain-containing protein 86 15 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0883 Lele-ChrLele12 16746438 16749986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0883 1 362 NAC Transcription Factor Family AT1G54330 51.099 2.99e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele12g0883 NAM 6.7e-40 No_clan