Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0882 ATGGGGCATCGTTGCTGCAGCAAACAGAAGATCAAGAGAGGACTGTGGTCTCCTGAAGAAGATGACAAGCTCGTCAAATTCATTACAACTCATGACCACAAAAGTTGGAGTTCTGTTCCTAAACTTGCAGGGTTGCAGAGATGTGGCAAAAGTTGCAGATTGAGATGGATAAACTATTTGAGACCGGACCTCAAGAGAGGTTCCTTCACTGCCGATGAAGAACAAACCATTATTGACGTTCATCGAATTCTCGGCAATAGATGGGCTCAGATAGCGAAGCATCTACCGGGAAGAACAGACAACGAGGTGAAGAATTTCTGGAACTCGTGCATTAAGAAGAAATTCATATCCCAGGGCTTCGACCCTCACACTCACAATCTTCTCTCTTCTCATGGACGTCCATCTCTTTCTCTTTCTTCTGTTTCTTCCAAATCTGAATCCACTTTCAGACTCGTCCATGAACCTCATCATCATCATAATACGAATATTCTTCAGCCTTGTACCTCCGTACCCGTCTTCTCCATCGAATACCACCAACCTACTAATCATAATGTCTCTAACAGTAGTATTAACAATAATAATAATAATAATAATAATGTCCATGAACCTCCTAATTTGCCCTTTGAACCATCCATTATTAATAATATTCCTGCTCCCAAGAACAATAATGATTGCTTATCTTCACTTGTCGGGTTGTCTGATAATATTGACAACAGATCATCATCATCAGTGTTGGTTTCTCGGGATGATCATATTCCAGCAACTGATCAGATCTTAAGATCAGCTCAGACGACATTAATGGAGGAAGGACAAATTACTGAAGCACGGTCATTAGAACAAGACAAGGACAAGAGGTGTACTACTGACAATAATATTAATTGTTTGGAGGCGTCAAGTGATAACAATAACTTTGATTTTGGGTTGCTGGAAGGTGTACTTAACTCTGAATATATGTCTTACGACGTTCTCTCTTCCATGGATGATGACTTTGCATGGAACTTTTAG 1005 0.403 MGHRCCSKQKIKRGLWSPEEDDKLVKFITTHDHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTADEEQTIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKFISQGFDPHTHNLLSSHGRPSLSLSSVSSKSESTFRLVHEPHHHHNTNILQPCTSVPVFSIEYHQPTNHNVSNSSINNNNNNNNNVHEPPNLPFEPSIINNIPAPKNNNDCLSSLVGLSDNIDNRSSSSVLVSRDDHIPATDQILRSAQTTLMEEGQITEARSLEQDKDKRCTTDNNINCLEASSDNNNFDFGLLEGVLNSEYMSYDVLSSMDDDFAWNF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0882 334 SMART sant 65 113 IPR001005 -
Lele12g0882 334 SMART sant 12 62 IPR001005 -
Lele12g0882 334 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele12g0882 334 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lele12g0882 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lele12g0882 334 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Lele12g0882 334 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lele12g0882 334 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Lele12g0882 334 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lele12g0882 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lele12g0882 334 CDD SANT 16 60 IPR001005 -
Lele12g0882 334 FunFam Myb transcription factor 68 115 - -
Lele12g0882 334 CDD SANT 68 108 IPR001005 -
Lele12g0882 334 FunFam MYB transcription factor 10 66 - -
Lele12g0882 334 Gene3D - 10 66 - -
Lele12g0882 334 Gene3D - 68 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0882 Lele-ChrLele12 16740986 16743121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0882 1 133 MYB Transcription Factor Family AT3G12720 83.459 1.10e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele12g0882 Myb_DNA-binding 9.3e-13 CL0123