Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0877 ATGGAGAGAATGTTCCCTCCAAAGAAGCCCTCTACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGAGACTCTGGCCTCGTCCTCACCACCGACCCTAAGCCTCGCCTTCGTTGGACCGTCGAACTCCATGAACGCTTCGTCGACGCCGTCACTCAACTCGGTGGCCCTGACAAGGCCACGCCTAAAACCATCATGAGGGTTATGGGAGTGAAGGGTCTTACCCTTTACCATCTCAAGAGCCACCTTCAGAAATTTAGGCTTGGGAAGCAACCCCACAAGGAATTCAATGATCACTCGATTAAGGAAAGTATGAGAGCTTCGGCTTTAGAGCTTCAACGAAACACTGCCTCGCCATCCGCCATGATTGGTCGTAACGTGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAGCTTGAGGTCCAGAAACATCTTCAGCTAAGAATTGAAGCTCAAGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCAAACACTTGCAGGTGAAAACATGGCTGCCACTAATAACTTAAAGGGAAATATCAACATTGAAGCTGCCCAAGCCATCCCTGAAATAGGAGGAGTCATGAAGGATTTTAGTTCGCCTCTTAGTTTTCCTTTTCAAGAACTCAACATCTATGGTGGTGGCAGTGGCGGCGGCGACCAACTTGATCATCATCTTCACCATATGGAGGGGCCACAGCTCGAAGGATTGATGATACCGAATAACAACAATGAAAATTTGTGTCTGGACAAGAAGAGGCCAAGTCCTTATAATAGTACTACAACTGGGAAGAGTCCTTTGATTTGGAACGATGATCTTCGGCTTCATCAAGATTTAGGGACGGCTTCTTCATGCCTTGGAGGACCTCAAGATGATCCTTTCAAAGGTCTTGACCAGGCGCAACTTCACATTGCACCGCCATCATTCGATCATAGAGCAGGTGAAATGGATCCCATGTCAGAGATTTATGACACGAAGCCAGTGCTACAAGGAGAAGCTGTGTGTGACAAGTTTTCAGACGCATCAGTGAAGCTTGAAAGGCCATTGCCAAGAAGGACACCAACTACCGCTCCTGTTCAGGGAGAAAGGATGAGCTCCATGATTAATAGTGGTACTATGGCACAAGGAAGAAGTTCACCATTTGGGTGA 1167 0.4696 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKESMRASALELQRNTASPSAMIGRNVNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMAATNNLKGNINIEAAQAIPEIGGVMKDFSSPLSFPFQELNIYGGGSGGGDQLDHHLHHMEGPQLEGLMIPNNNNENLCLDKKRPSPYNSTTTGKSPLIWNDDLRLHQDLGTASSCLGGPQDDPFKGLDQAQLHIAPPSFDHRAGEMDPMSEIYDTKPVLQGEAVCDKFSDASVKLERPLPRRTPTTAPVQGERMSSMINSGTMAQGRSSPFG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0877 388 MobiDBLite consensus disorder prediction 355 388 - -
Lele12g0877 388 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Lele12g0877 388 MobiDBLite consensus disorder prediction 364 388 - -
Lele12g0877 388 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 184 IPR044848 GO:0003700
Lele12g0877 388 FunFam Myb family transcription factor 34 92 - -
Lele12g0877 388 Gene3D - 34 92 - -
Lele12g0877 388 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Lele12g0877 388 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Lele12g0877 388 MobiDBLite consensus disorder prediction 1 20 - -
Lele12g0877 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Lele12g0877 388 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0877 Lele-ChrLele12 16685000 16687661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0877 4 388 G2-like Transcription Factor Family AT1G79430 55.416 1.34e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele12g0877 Myb_DNA-binding 2.2e-06 CL0123