LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele12g0876	ATGACCCTGGCTTTCGCAGCATTGAGCTTACGCTCGTCATCAATGGGATCTTGGAGGCTTATCGCTCGCTCTTCAACCTTGTTTTCCATGCAGACCACCGCTCCTTCCTTCACTCGCCAGATGAGCGTGGATGCAAAAAGTGTCGCCTCTCAGCTTAATAGTTCTGGTCTGTTGCGGACTCAGGGCCTTATTGGAGGCAAATGGAGTGATGCCTATGATGGCAAAACCATAAAGGTTTATAATCCAGCAACTGGTGAATCTATAGCAGATATTGCATGCATGGGTGGAAGAGAGACAAATGATGCAATATCCTCAGCCTATGACGCATTTCAATCTTGGAGCAAAACCACTGCTGCTGAGAGGAGTAAACTTCTGAGAAAATGGTATGATTTGCTAATGTCACACAAGGAAGAGCTTGCACAACTTATAACCTTAGAACAAGGAAAGCCTCTTAAAGAATCTCTTGGTGAGATAAATTATGGGGCTGGTTTTATTGAGTTTTCGGCGGAGGAGGCAAGGCGTGTATATGGAGATATAATTCCTGCACCACTATCTGATCGACGATTATTTGTTTTAAAACAGCCTGTAGGGGTTGTTGGTGCTATCACACCTTGGAACTTTCCTTTGGCTATGGTTACCCGGAAGGTTGGCCCAGCCCTTGCGTGTGGCTGTACAGTGGTCATTAAGCCCTCTGAACTTACTCCTCTCACAGCTTTGGCTTCTGCAGAGCTAGCAATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTAGTCATGGGAAATGCTCCTGCAATTGGGGATGCTATAATTGCAAGTCCACAGGTAAGGAAGATCACATTTACTGGCTCAACGGCAGTTGGAAAAAAGTTGATGGCCGGTGCTGCTGGAACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCCCCTTGCATAATATTTGATGATGCTGATCTTGATGTGGCAGTAAAAGGAACTATTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTATGTGCAAACAGAATTCTTGTGCAAGAAGGTATCTATGAGAAATTTGCAGCCGCCATCCTTGATGCTGTTAAGAGTATGAAAGTTGGGGACGGTTTTAGTGAAGGTGTGAATCAGGGACCTCTAATCAATGAAGCTGCTGTGGAAAAGGTTGAATCCTTACTTCATGATGCTACCTCTAAGGGGGCGAAAATAATTCTTGGGGGTAAAAGACACAGCCTTGGATTCACTTTTTATGAACCTACAGTCGTCACTGATGTCAACAATAAGATGCGCATATCCAGAGAGGAAGTATTTGGACCAGTTGCTCCTCTTTTAGGATTTAAAACTGAGGAGGAGGCTATCAAAATCGCCAACGACACTAATGCAGGGTTGGGTTCCTATATATTTACAAACAGTGTTCAACGCTCTTGGCTTGTTGCTGAAGCTCTTGAATACGGACTCGTTGGCGTAAACGAAGGAGTTGCTCCATTTGGTGGTGTTAAACAGTCTGGCCTTGGAAGAGAAGGCTCCAAATATGGAATGGATGAATTTTTGGAGATCAAATATGTTTGCTTGGGAAACATGAACAAAGAGTGA	1593	0.4426	MTLAFAALSLRSSSMGSWRLIARSSTLFSMQTTAPSFTRQMSVDAKSVASQLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIADIACMGGRETNDAISSAYDAFQSWSKTTAAERSKLLRKWYDLLMSHKEELAQLITLEQGKPLKESLGEINYGAGFIEFSAEEARRVYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMVTRKVGPALACGCTVVIKPSELTPLTALASAELAIQAGIPAGVVNVVMGNAPAIGDAIIASPQVRKITFTGSTAVGKKLMAGAAGTVKKVSLELGGNAPCIIFDDADLDVAVKGTIAAKFRNSGQTCVCANRILVQEGIYEKFAAAILDAVKSMKVGDGFSEGVNQGPLINEAAVEKVESLLHDATSKGAKIILGGKRHSLGFTFYEPTVVTDVNNKMRISREEVFGPVAPLLGFKTEEEAIKIANDTNAGLGSYIFTNSVQRSWLVAEALEYGLVGVNEGVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGNMNKE	530

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele12g0876	530	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	303	310	IPR029510	GO:0016491
	Lele12g0876	530	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	307	492	IPR016163	GO:0016620
	Lele12g0876	530	FunFam	Succinate-semialdehyde dehydrogenase I	74	317	-	-
	Lele12g0876	530	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	331	342	IPR016160	GO:0016491
	Lele12g0876	530	Pfam	Aldehyde dehydrogenase family	70	522	IPR015590	GO:0016491
	Lele12g0876	530	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	54	527	-	-
	Lele12g0876	530	TIGRFAM	SSADH: succinate-semialdehyde dehydrogenase	79	520	IPR010102	GO:0009013\|GO:0009450
	Lele12g0876	530	SUPERFAMILY	ALDH-like	49	525	IPR016161	GO:0016491
	Lele12g0876	530	FunFam	Succinate-semialdehyde dehydrogenase I	307	495	-	-
	Lele12g0876	530	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	74	516	IPR016162	GO:0016491
	Lele12g0876	530	FunFam	Aldehyde dehydrogenase, putative	494	520	-	-
	Lele12g0876	530	CDD	ALDH_F5_SSADH_GabD	79	524	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele12g0876	Lele-ChrLele12	16665394	16676064	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele12g0876	16	530	Aldehyde Dehydrogenase Gene Family	AT1G79440	76.154	0.0	803