Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0865 ATGGAAAGTGGTGGAGCCAATGGGAGTTCTGAACTAGCCTGCACATTGCCACACAGGATTGAGGCTGCAGAAGCTGACAGGCTCCACCGCTCTCGCACAGATCCCACAGCAATGCGCAAGAGTTTTGATCCAGTGTATATGCCCCCATGTTTTGTATTTTATACAATCAGTTGCCAGTCTCTGGCGTTAGCACTTTGTGGTTCATTTGTATCGTCTCAGCATTTTTATGAGTGTGTGAAGTGCAACGAAGTAGGATCATTGATTTGCTGCGACACCTGTGCTTGCACTTATCATTATGAATGCCTTGATCCTCCGCTTGAGTCGGTGCCGGAGGGCGATTGGTTCTGTCACAACTGCTCTGAAGAAGTTGAAAACCTTTCAGATTCAACAGTGAATCCTAGGGGGAGACGACGACGTTCTCTGAAAAGAGCATGCAAAGTTCCTTCCGGATGTTGCTTATGTTTAACCATCAACAAGACATTAATCCCCTATGAAAATGAAGTCTTTTCATTTAAAACCAAGTCATCAACTCCTCAGTCCAACTTATCAAATCGTGGAGAACCTGCTGCTCATAATCATGATGGCGACAAACGTTCGATCCTTAGGCGCAAAGGAAGACCGCCTGGGAAGAGAACTGGCAAGGGGCCTAGTGTGGCTCCTCAGCAACAAAATGATGAACAACAACAACATAACCAAACACAACCAGGCCTCGCTATGGTGTTATATGGCCAAAACCTTAGCCCTCAAGAACTAGCAGCTAGAAGAGCAACTGCGGCAGAGGCAGCTCGGCGTAATAAAGCGAAAGAAACTCCATGGACTGAAGATGAAGTTGATGCTTTATGGATTGGTGTTCGGAGATATGGTCAGAATAATTGGGGCACAATTCTGAATGATGAAAATCTGAGAGTTCTTAAACTTTGTAAGAAAACCTCTCAGGATCTCTCCATGAGATGGAAAAAGGAGCTCGAAATTATGTACTCCATTGTCAAAACATCAGGCTTCTTCTTGCCTCCTCCTCCTGCTACTGCTGCTGCTGATCAACCTGCAGTAGTTCACACACCAGTAGAACCAGCAATATTATCAAACGAAGAAGCCACAGTCCAACAACAATTGTCAGTTGCCCAACAAATCCCAGTTATTTCTTCTGCAGAATCTGCTCCTTTGTTTCCTAATAGCAATCACCATGGATCGTCTTCATCATCTTCTTCTCCCCTTAGAGCTCCAGCTCCTTTGATTCCACCAGCAGCAGGAGAAGCAGAGAGAGGACCTATAAATCAATCCACAAGCCACCAGCTGCAGCATGTTTTGGCCCCTGCAGGAATTCCATTTGCTTCCCCAGAAATCCCAGTCCCAAGGGCTCGGGTTTCTTTTGCTGCTGCTGCTCCTCAATGGAGGCCAAATCTAAACTTGAACCCCATTGTCAATCATCTTATGTTTCAGGCTTTTCAGCGTACTCAAATGATGAACCCCATGGGTGTGCAGGCTCCACGAGCAGTAGCCATGGCTGCCCAGAGACCTCCAGCTGCAAATACCATTGTTCCCCCCACCAACCTCTTCGTCAGTGGTTTCTTCCCTGTTCACCATGCACATGGTGCTCGACCCAACAACCCTGCCGTCCGAAACCCGTATTCAGGTTTTGTTTTCAACTTGTTTTTTGTTTTGGGTCTGGCATTCTGCTTCCGGGGTCACCGGGAAAGCCACGCCGAGAAGAAACAGTGCAAGCGAACTCAGAAACAAAGCCTTTCTCTTTCCCTTCACCGACCTTACGTCTAG 1773 0.4698 MESGGANGSSELACTLPHRIEAAEADRLHRSRTDPTAMRKSFDPVYMPPCFVFYTISCQSLALALCGSFVSSQHFYECVKCNEVGSLICCDTCACTYHYECLDPPLESVPEGDWFCHNCSEEVENLSDSTVNPRGRRRRSLKRACKVPSGCCLCLTINKTLIPYENEVFSFKTKSSTPQSNLSNRGEPAAHNHDGDKRSILRRKGRPPGKRTGKGPSVAPQQQNDEQQQHNQTQPGLAMVLYGQNLSPQELAARRATAAEAARRNKAKETPWTEDEVDALWIGVRRYGQNNWGTILNDENLRVLKLCKKTSQDLSMRWKKELEIMYSIVKTSGFFLPPPPATAAADQPAVVHTPVEPAILSNEEATVQQQLSVAQQIPVISSAESAPLFPNSNHHGSSSSSSSPLRAPAPLIPPAAGEAERGPINQSTSHQLQHVLAPAGIPFASPEIPVPRARVSFAAAAPQWRPNLNLNPIVNHLMFQAFQRTQMMNPMGVQAPRAVAMAAQRPPAANTIVPPTNLFVSGFFPVHHAHGARPNNPAVRNPYSGFVFNLFFVLGLAFCFRGHRESHAEKKQCKRTQKQSLSLSLHRPYV 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0865 590 CDD SANT_TRF 271 319 - -
Lele12g0865 590 MobiDBLite consensus disorder prediction 174 233 - -
Lele12g0865 590 SUPERFAMILY FYVE/PHD zinc finger 73 122 IPR011011 -
Lele12g0865 590 MobiDBLite consensus disorder prediction 385 428 - -
Lele12g0865 590 Pfam Myb-like DNA-binding domain 272 323 - -
Lele12g0865 590 SMART PHD_3 77 120 IPR001965 -
Lele12g0865 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 122 IPR013083 -
Lele12g0865 590 Pfam PHD-finger 78 121 IPR019787 -
Lele12g0865 590 ProSiteProfiles Myb-like domain profile. 264 322 IPR001005 -
Lele12g0865 590 SUPERFAMILY Homeodomain-like 268 323 IPR009057 -
Lele12g0865 590 Gene3D - 243 330 - -
Lele12g0865 590 PANTHER PHD FINGER PROTEIN 73 385 - -
Lele12g0865 590 MobiDBLite consensus disorder prediction 216 233 - -
Lele12g0865 590 MobiDBLite consensus disorder prediction 385 406 - -
Lele12g0865 590 ProSitePatterns Zinc finger PHD-type signature. 78 119 IPR019786 -
Lele12g0865 590 ProSiteProfiles Zinc finger PHD-type profile. 75 122 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0865 Lele-ChrLele12 16531510 16541018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0865 78 120 PHD Transcription Factor Family AT5G36670 48.837 3.95e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele12g0865 Myb_DNA-bind_6 4.5e-05 CL0123