Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0862 ATGGATCAGTCAGAGCAGGCACAACAACAGCAGCAGCAAAAGCATGGGGTCGGAGTTGCAACTGGCCCTGGTCAGATGGCCTATTCTACTCTCTACCAGACTGCTCCCATGGTAGCTTCTGGAACACCTGCCATAGCTGTACCTTCCTCAGCACAGCCTCCGGCCGCCTACTCTAATCCCCCTCACCAAATTGCATACCAGCAAGCACATCATTTCCACCATCAACAGCAACAGCAGCAGCAGCTTCAGATTTTTTGGGCTAACCAAATGCAAGAAATCGAGCAAACAACTGACTTCAAGAATCATAGTCTTCCACTTGCTAGGATAAAAAAGATAATGAAAGCTGATGAGGATGTCCGGATGATTTCAGCAGAGGCCCCAGTGATATTTGCAAAAGCATGTGAAATGTTTATCCTGGAGTTGACTCTGCGATCATGGATCCACACGGAAGAAAACAAGAGGAGAACGCTACAGAAGAATGACATAGTGGCAGCTATTTCGAGGACTGACGTATTTGATTTCTTGGTTGACATTATCCCAAGAGATGAGTTGAAAGAAGAGGGACTTGGAGTAACAAAAGCTACAATTCCAGTTGTGGGTTCCCCAGCTGATATGCCCTATTATTATGTCCCACAACAGCATCCTGTAGGACCTACTGGGATGATCATGGGAAAACCGGTTGACCAGGCAGCGCTATATTCTAGCCAACAGCCTCGACCTCCTCATATGGCTTTCATGCCATGGCCCCAAACACAACCTCCAGAGCAGCCGCCACCTGATCAGCAACAAACAGACAGTTGA 801 0.4769 MDQSEQAQQQQQQKHGVGVATGPGQMAYSTLYQTAPMVASGTPAIAVPSSAQPPAAYSNPPHQIAYQQAHHFHHQQQQQQQLQIFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIVAAISRTDVFDFLVDIIPRDELKEEGLGVTKATIPVVGSPADMPYYYVPQQHPVGPTGMIMGKPVDQAALYSSQQPRPPHMAFMPWPQTQPPEQPPPDQQQTDS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0862 266 MobiDBLite consensus disorder prediction 242 260 - -
Lele12g0862 266 Pfam Core histone H2A/H2B/H3/H4 63 166 IPR007125 GO:0003677
Lele12g0862 266 SUPERFAMILY Histone-fold 60 175 IPR009072 GO:0046982
Lele12g0862 266 MobiDBLite consensus disorder prediction 234 266 - -
Lele12g0862 266 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 54 236 - -
Lele12g0862 266 MobiDBLite consensus disorder prediction 1 18 - -
Lele12g0862 266 FunFam Nuclear transcription factor Y subunit gamma 69 181 - -
Lele12g0862 266 MobiDBLite consensus disorder prediction 1 20 - -
Lele12g0862 266 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0862 Lele-ChrLele12 16512645 16513445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0862 9 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.925 7.21e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele12g0862 Histone 1.8e-17 CL0012