Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0842 ATGGGAAAAGGAAGAGCTCCATGCTGTGATAAGAACAAAGTGAAGAGGGGACCTTGGAGCCCTCAAGAAGATCTTAAACTCGTCACCTTCATCCAGAAACATGGCCATCACAATTGGCGTTCCCTCCCCAAACAAGCAGGGCTTCTTCGATGTGGAAAAAGCTGTCGTCTGAGATGGATCAACTACCTAAGGCCTGATGTTAAGAGAGGAAACTTCACAAAAGAAGAAGAAGACACCATCATAAAGCTCCATCAGACCTTAGGAAACAAGTGGTCAAACATTGCGTCGGAGTTGCCTGGTAGAACAGACAATGAGATCAAGAATGTGTGGCACACCCACTTGAAGAAGAAACTACTGAAGAACAAGAACAGTTCAGATAATGATGATCAATCCAAGCAAGAATCATGCATAACCTCTTCATCATCTTCGTCTTCCTCAACATTAATTCCTCAGAAAACTACAGACAATATTAATGAGCAAAACTCGAAAAATCTTAATAAAGATCAGTCCTCATCACCCCCAAATTCCTTTCAATGTTCTACTGACCAATCATCACCGACACCTATCTGCAAATTACAAGACGATGATCATTATCAGCTGGAACAAGTCGCAGCAGGTTCTTCTTCATTGTATCAAGGAACGGGGCCAGCAGATGATAATGTTAATAATTATAATAATACTACATTACTAAACGAGGTTGTTGACAAGCCAACTAATGATAACAGTACCAGTTGTGGTTTGCTTGAAATACCATTATTGGAGGCAGACGATGATTTTTGGAACATGTTGGAAGATTACAACATAGGAGGAGGAGGAGGATCCTTTGTTGTGTCAAATAATGATAATCATCAGGTTCATTATTCAGATGCCGAAACTATGAAGTACTGGATCAGGGAGATTGAGAAGGATCTTGGATTGGAACCTCAAGCATCATCATCATCATCTGATCTAACCATGGCATTGTCTGATGTAGACATATGGCTTAATGGTAGTGCTGGTTTCTGA 1005 0.407 MGKGRAPCCDKNKVKRGPWSPQEDLKLVTFIQKHGHHNWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTKEEEDTIIKLHQTLGNKWSNIASELPGRTDNEIKNVWHTHLKKKLLKNKNSSDNDDQSKQESCITSSSSSSSSTLIPQKTTDNINEQNSKNLNKDQSSSPPNSFQCSTDQSSPTPICKLQDDDHYQLEQVAAGSSSLYQGTGPADDNVNNYNNTTLLNEVVDKPTNDNSTSCGLLEIPLLEADDDFWNMLEDYNIGGGGGSFVVSNNDNHQVHYSDAETMKYWIREIEKDLGLEPQASSSSSDLTMALSDVDIWLNGSAGF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0842 334 SMART sant 68 116 IPR001005 -
Lele12g0842 334 SMART sant 15 65 IPR001005 -
Lele12g0842 334 CDD SANT 71 113 IPR001005 -
Lele12g0842 334 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lele12g0842 334 MobiDBLite consensus disorder prediction 120 190 - -
Lele12g0842 334 FunFam Transcription factor RAX3 9 69 - -
Lele12g0842 334 Gene3D - 70 145 - -
Lele12g0842 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lele12g0842 334 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lele12g0842 334 FunFam MYB transcription factor 70 145 - -
Lele12g0842 334 CDD SANT 18 63 IPR001005 -
Lele12g0842 334 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lele12g0842 334 MobiDBLite consensus disorder prediction 130 190 - -
Lele12g0842 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 219 - -
Lele12g0842 334 Gene3D - 16 68 - -
Lele12g0842 334 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lele12g0842 334 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lele12g0842 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0842 Lele-ChrLele12 16409130 16411509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0842 1 118 MYB Transcription Factor Family AT1G56160 88.983 9.33e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele12g0842 Myb_DNA-binding 7.1e-14 CL0123