Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0841 ATGCTGGTTCCCATTCTTTTTCAACCTTCAAATACTCCTTTTTCCTCTTCGCGGCAACTGCGACCAACAATCCCTCTGTGTGCGTCTCTCTCTCTTCTATTGCACTCACTTTCTCCATCAATAACAGCAAGCAAGATGCAGATCTTCGTCAAAACTTTGACAGGAAAGACTATCACTCTTGAGGTCGAGAGTAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACACTTCATTTGGTCTTGAGGCTTAGAGGAGGAACAATGATTAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATTGACATCGAACCGACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGGATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGGAAGCAGCTTGCAGATGACAAAACAGCTAAAGAGTACAACATTGAAGGTGGTTCTGTGCTTCACTTGGTGCTTGCCCTTAGGGGCGGTAGTCTTTAG 600 0.4483 MLVPILFQPSNTPFSSSRQLRPTIPLCASLSLLLHSLSPSITASKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0841 199 Pfam Ubiquitin family 48 119 IPR000626 GO:0005515
Lele12g0841 199 Pfam Ubiquitin family 124 195 IPR000626 GO:0005515
Lele12g0841 199 PRINTS Ubiquitin signature 98 119 IPR019956 -
Lele12g0841 199 PRINTS Ubiquitin signature 56 76 IPR019956 -
Lele12g0841 199 PRINTS Ubiquitin signature 77 97 IPR019956 -
Lele12g0841 199 ProSiteProfiles Ubiquitin domain profile. 46 121 IPR000626 GO:0005515
Lele12g0841 199 ProSiteProfiles Ubiquitin domain profile. 122 197 IPR000626 GO:0005515
Lele12g0841 199 SMART ubq_7 122 193 IPR000626 GO:0005515
Lele12g0841 199 SMART ubq_7 46 117 IPR000626 GO:0005515
Lele12g0841 199 CDD Ubl_NEDD8 124 197 IPR038738 -
Lele12g0841 199 ProSitePatterns Ubiquitin domain signature. 148 173 IPR019954 -
Lele12g0841 199 PANTHER UBIQUITIN 46 123 - -
Lele12g0841 199 SUPERFAMILY Ubiquitin-like 43 121 IPR029071 -
Lele12g0841 199 ProSitePatterns Ubiquitin domain signature. 72 97 IPR019954 -
Lele12g0841 199 FunFam NEDD8 protein 122 199 - -
Lele12g0841 199 FunFam Polyubiquitin 3 46 121 - -
Lele12g0841 199 CDD Ubl_ubiquitin 46 121 - -
Lele12g0841 199 Gene3D - 124 199 - -
Lele12g0841 199 Gene3D - 40 123 - -
Lele12g0841 199 SUPERFAMILY Ubiquitin-like 124 197 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0841 Lele-ChrLele12 16398725 16401698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0841 124 197 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.162 1.06e-26 97.4