Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0827 ATGGGCGGCGAAGAAGAATTCAGGAAAAAGGAAGAGTTTATGGAAGACGATGATGATGATGAAGTTGAACTTCCAGGGTTTCGGTTTCATCCCACAGATGAAGAACTCGTTGGTTTCTATCTTCGAAGGAAGCTCGACAAGAAACCAATCAGAATCGAACTCATCAAGCAAATCGATATATACAAATACGATCCTTGGGACCTTCCAAAAGCGAGCTGCACAGGAGGGGAAAAGGAGTGGTACTTTTTCTGCAAGAGAGGGAGAAAGTACAGGAACAGCATAAGGCCAAATAGAGTGACAGGATCAGGGTTCTGGAAAGCTACAGGGATAGACAAGCCTGTGTATTCTCTTGCTGGACAAGGCAGTGATTGCATTGGCCTCAAGAAAACTCTTGTTTACTACAGAGGCAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTCCCTTCTCATCAAGATGTCGCCGCCACCATTGCCCAAGAAGCTGAAATCTGGACATTGTGTAGAATTTTCAAGAGAAATGTTCCACCAAGGAAGCACATAACAGATTGGAGATCATCACAAGCAGGTACCAAACGTCAATATTTTTCAGTAGTCGACACTAACACATCATCGAGACTTATTACAAGCACCGTGGACAGTGATCATCATGCTAACTACGACAATGATGACAAAGAAGCTTACATCAATTTTGGAGGAAGCAATCATCATCATCAAGACCATTATTATTCTCATCAGGTTAGTCGTCATCATCATCATGAGCAGAAACCAGCAGTCTTCAATAACATTGATCAGAGGAATAATAATAATAATAATCAGTTCATGATGATGATGAACTCCCAGAAAGCAGCAGCACAACAACAACAGCCACAATTATTCACTGCTTCATCTTCGTCTTCTTCTTCTAACTTGTGGATTAATCATAACCCTAATTCTTCTGCTGCTGCCAATGACTTCCTCACCTATGAGAATTGGGATGAACTTGGATCAGTTGTCAAGTTCGCTCTTGATTCCTCCATCATGTAA 1041 0.4198 MGGEEEFRKKEEFMEDDDDDEVELPGFRFHPTDEELVGFYLRRKLDKKPIRIELIKQIDIYKYDPWDLPKASCTGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLAGQGSDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSHQDVAATIAQEAEIWTLCRIFKRNVPPRKHITDWRSSQAGTKRQYFSVVDTNTSSRLITSTVDSDHHANYDNDDKEAYINFGGSNHHHQDHYYSHQVSRHHHHEQKPAVFNNIDQRNNNNNNQFMMMMNSQKAAAQQQQPQLFTASSSSSSSNLWINHNPNSSAAANDFLTYENWDELGSVVKFALDSSIM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0827 346 Pfam No apical meristem (NAM) protein 25 153 IPR003441 GO:0003677|GO:0006355
Lele12g0827 346 MobiDBLite consensus disorder prediction 1 23 - -
Lele12g0827 346 ProSiteProfiles NAC domain profile. 23 178 IPR003441 GO:0003677|GO:0006355
Lele12g0827 346 SUPERFAMILY NAC domain 24 178 IPR036093 GO:0003677|GO:0006355
Lele12g0827 346 Gene3D NAC domain 32 180 IPR036093 GO:0003677|GO:0006355
Lele12g0827 346 FunFam NAC domain-containing protein 35 32 181 - -
Lele12g0827 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0827 Lele-ChrLele12 16273836 16275847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0827 20 178 NAC Transcription Factor Family AT5G39820 58.989 1.86e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele12g0827 NAM 6.7e-36 No_clan