Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0820 ATGGCGAAACCTGGGCGAGGCCGTCGCTCACCGCCGTCGGGTTCCATCTCGGGCTCATCATCGCGCTCTAAGTCTTCCTCTCCCTCCGATTCCCGCTCCAGCTCTCGTTCCCGCTCTGCCTCTCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCATCCCGCAGTGTCAGTTCCGGGAGCCGAAGTCCACCTCCTCCAAGGAGGAAACGTCCTGCTGAAGCAGCTAGGAGAGGTAGATCTCCTCCTCCCCAATCTAAAAGGATATCTCCACCCCCCAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTTCACATAGATAAACTCAGCAGGAACGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTTGGTGAGGTTGTAAACGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTACTATACATGGATGGTGCCCAGATAGATGGCAATATTGTTAAGGCCAGATTTACCTTGCCGCCAAGGCAGAAGGTTTCACCACCCTCAAAGGCTCCTGCTCTTGCTCCAAAGAGAGATGCTCCTAGAGCTGATAATGCTAGTGCAGATGCTGAAAAAGATGGGCCAAAGAGGCAAAGAGAATCTTCTCCTAGGAGAAGGCCTCCTTCACCACGAAGGAGATCTCCCATGCCTCGAAGAGTTGGATCACCAAGGCGCCCAGATTCTCCAGTTCGTCGTCAAATGGACTCACCCTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTGTCTCCCCTGCAAAAGGCAGATCTCCAACTCCGCCAAGGCGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGTCCAATTCGCAGGCGTTCTCCTCCTCCTCCAAGGCGCCGTTCACCACCTAGACGAGCTCGTAGTCCTAGAAGGTCTCCAATCAGTCGGAGACGTATTCGCTCTCCGCCACGGAGGTCTGCACGCTCACGATCAAGATCATTCTCACCCCCACCTCGGAGAGGACGGCCACCTATGAGACGTGGAAGGTCATCATCATCCTACTCTGATTCACCAAGTCCTCGCAAGGTATCCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGAAGAGGAAGTAGCAACAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAGACCGTAG 1224 0.5351 MAKPGRGRRSPPSGSISGSSSRSKSSSPSDSRSSSRSRSASRSRSFSSSSSPSRSVSSGSRSPPPPRRKRPAEAARRGRSPPPQSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPSKAPALAPKRDAPRADNASADAEKDGPKRQRESSPRRRPPSPRRRSPMPRRVGSPRRPDSPVRRQMDSPYRRGDTPPRRRPVSPAKGRSPTPPRRLRSPARVSPRRMRGSPIRRRSPPPPRRRSPPRRARSPRRSPISRRRIRSPPRRSARSRSRSFSPPPRRGRPPMRRGRSSSSYSDSPSPRKVSRRSRSRSPRRPLKGRGSSNSSSSSSPPPARRP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0820 407 MobiDBLite consensus disorder prediction 1 99 - -
Lele12g0820 407 MobiDBLite consensus disorder prediction 287 338 - -
Lele12g0820 407 MobiDBLite consensus disorder prediction 12 62 - -
Lele12g0820 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Lele12g0820 407 CDD RRM_RNPS1 104 176 IPR034201 -
Lele12g0820 407 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 377 - -
Lele12g0820 407 MobiDBLite consensus disorder prediction 202 227 - -
Lele12g0820 407 MobiDBLite consensus disorder prediction 179 407 - -
Lele12g0820 407 SUPERFAMILY RNA-binding domain, RBD 89 186 IPR035979 GO:0003676
Lele12g0820 407 FunFam Serine/arginine-rich splicing factor SR45 3 187 - -
Lele12g0820 407 SMART rrm1_1 103 176 IPR000504 GO:0003723
Lele12g0820 407 Gene3D - 14 187 IPR012677 -
Lele12g0820 407 MobiDBLite consensus disorder prediction 387 407 - -
Lele12g0820 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 172 IPR000504 GO:0003723
Lele12g0820 407 MobiDBLite consensus disorder prediction 244 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0820 Lele-ChrLele12 16209092 16213641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0820 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 2.57e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0820 12 16209092 16213641 Lele29g1558 29 22425265 22427576 CCT
Lele12g0820 12 16209092 16213641 Lele12g0820 12 16209092 16213641 ECH