Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0811 ATGCCAATAAGCATGAGTTTGATGAAGGAATGTCATCGGAAATCACCTGCAGAAACCGTCCGCTCATTCGTCGGCAATAGACTCAGTTTGGAGAAAATTCGGAGCTTAAAGATGAAATCGAGCGGCGACAAAGATAAAAATCGAGGCGTCAGCTTGCAAATGAACAACCTCCATCAGCGTCTTCTTCATGTATTGAACCTCGGCAACAGATATTTTGACGAGAGGACAAACCAATGGAAATGGCAGAGCGCAAACATTGAAGTACAGAAACAAGTTATACGCTCAATTGATGTGTTTCTTGATTTTGTATCTGGCGATGCGCGTGCAGCGCATCATACTATTGTAAAGGATTCTGTTGCTGATATTTTGGGAGCATTATTGTGGATTCTTCAATGCAAAAGTAGACCCTTGTTATGTATGGCAGCAAATGTAGCTGTAAAGTTAATTAGTGTTTTACCCAATTCAATATTGGAATCTTATATACTAGATCTTGTCTATGCTCTATCATCCTTGCTATCTTCACCTTTTGTAGAAGTTGCAATACCCTGTTCTACTTCTTTGAATCTGGTAATTTCAAATTTAAATGCCAGTAGTGCGAAGGCAGTTTGGGAGGTACTGAAACAAACAGATTGTATCATTCATATTGTGGGCAATATACACAAATTTTTTGGAGGTGAAAGCCCAATGAAAATTGAATATTTCGAACAGATGTCTTCACTTTTGGGCTCAATATTGTTGTGGTGGCCTCCAACTCGGTTTCCTGTTTGGAATGATGTTAAACTGATAAATACTTTGTCAGATATGTATGCAAGGACAGATGATTCTACCAAACTTGTAATTTTGAAGCTGTACACATCTTTAGCTTTATGTGGATCTGTGGCCAAAAAACTCATAGAGAATGGAAAAGTCTTTCTACAAATGGTTGTGCAATCCATGGGAAAATCGTACCCTGATGCTGTGAGAATAGAAGGCTTTAGGCTTGCTCAATGTCTATTGCGATCCCAAGAGAATTGTATGAAAGTGATGGATACATGTGGTGAAGCTCTTGTTGATGCCATAATTTGTGGGATGGAAGAAACGGGGATGCAATCTAGAAAATTTGTAAACAAGAATAGTTCTATATTGGTGGAAGCATGCAGATTGGCTTTAGTAACTCGTTGGGCAGGTGATCATCATATTGGTTTTTGGAAGAAAAGAATTGATAGAGTCCTCCTTAATCTTTTGATAGAAAACATTCAAGATTTATCAGAGGAACATGTCTCATCATTGGACAAACAAATATCCATCGCAAAGGAGGGTTTAAAAACCAATCATCAGTTTTGTGTGAGGGGTTATGTGTGGGACATTCTTGGTTGGCTTACGATACATTCTGGAGAAAATTTCAACCCTTTGATCCATGGAAGTGAGCTCTACATCAACTTAATTATCATATGCGCATGCTTAACTTTTGAGGATGTGATTAAGAAATGGTGCCGCATATATCACAAGTATGTTGATGATAGTTTTCAGAGTGAACCAGCAGCAAGGGCTGTTCTAATGATGATTTATTCTCCATGTAATTACATTTCATCCCAAGCCAGACTCATATTTTCTGAGACATACTCTTCAGATCATTTCAGAAACTTAGTACATACGCTGGAATATACATCATCACTTGAAAGTTATGGGTCATTTGATAAGATCCAACTTATTATCAACTTGATTGGATTGATCGCTTTTTTAAGTTTACCACATCAGCATGCACTTGAAAGCAAATATATAAAGACCGTTGCTTTCTTAGTAAAACGATGCTTAGGCAATGATATGGATGTATCAAGGTTCGGCTTGGCTCCTCATTTGCACGCTACATTATATGAAAAATCCTGTTGTTGTATGCATGCAGACGATTGGGAAGGTTCTAATATTCTTTTGTTTTATGGTTTGTGGGGCTTAGCTGAAATGGTCCATCAATCTACTTCTTTACAAAATACTTCCCACATATCTACCGTTGATATGCAATACTTTGAAGGTCAATTAATTAGCGAACTCCTTGAGATTTGCAGTAATGCCTCTTTTACTCATGGTTTAAGATGGTATGCATCTTATATTCTTAGTCATTTTGGAATTTATGGTTTCCCAAATGAACTAGGCAAAAGGGTCGGGAGATGTCTTGATGAGAAAGAATATGCAGATATTCAACTCATTGTGGCAAATGGCGATACTTTGAGTGTTCATGGAGTTATTCTTGCTGTTCGATGCTCGTCATTGCTCCCTCCTGAAGTCTTACTTGTTAAGGAAAAAAGAATCGATGACCAACCCATTAGGGAAGTTCGTTTATCTTCTCATGTTGATTATGAAGCATTAGTGAAGTTGTTAGAGTATGCGTATGTGGGATACTTTCATGCGGGTGAAGAAATTGTGAAGAAGTTGAAAATTCTTGCTAAGCGCTGCAATCTGCAGCCTCTCTTGCGAATGCTTCATAGACAAAGTCCAAAGTGGGGCACATCATTTCCCAGCTTTGATCTCACTTCATCTCTTGTTTCAGCTGGAAGTTGTTTTTGGGATGTTATATTGGAATCTAAACAAGATAAACTTGAAAGATGGACATGCTGTATATGCTCTCATTCTGTTCTACATTTGCATGTTCATAAAGTTGTATTACAGTCTGGCTGTGATTATTTGCTAGGCTTGTTTCGTTCAGGAATGAAAGAGAGTCATTCAGAAATCATAAAGCTTCCCATTAGTTGGGAAGCGGCGGGTAAGCTTGTGCACTGGTTCTATTCCAATGAGCTTCCAAAGCCTCCATGTGGATGTTTGTGGGATAATATGGATGATGAGCAAAAACTAGTGAGTTTAGAATCATACGTGGAGCTTTATTGGCTTTCAGAATTCTGGATTTTAGAAGATGTTCAAGAAGCTTGCTGGAATGTGATTCTATCATGTCTTGATAATGCAAAGCAGCTGTCAATTAAAATACTTAAAATGGCTGGCAACCTCTCTCTGTGGAAATTAGCTGATTTAGCAGTTACTCACTTGGCTCCTTCATATAGTCAATTGAGAGATTCTTGTGAACTTGCAGATTTGGACGACTCTCTTGTTCACTTAATTTGGTCTGCTTCTACTCAACTTAGCCAAAATGGATGA 3123 0.3817 MPISMSLMKECHRKSPAETVRSFVGNRLSLEKIRSLKMKSSGDKDKNRGVSLQMNNLHQRLLHVLNLGNRYFDERTNQWKWQSANIEVQKQVIRSIDVFLDFVSGDARAAHHTIVKDSVADILGALLWILQCKSRPLLCMAANVAVKLISVLPNSILESYILDLVYALSSLLSSPFVEVAIPCSTSLNLVISNLNASSAKAVWEVLKQTDCIIHIVGNIHKFFGGESPMKIEYFEQMSSLLGSILLWWPPTRFPVWNDVKLINTLSDMYARTDDSTKLVILKLYTSLALCGSVAKKLIENGKVFLQMVVQSMGKSYPDAVRIEGFRLAQCLLRSQENCMKVMDTCGEALVDAIICGMEETGMQSRKFVNKNSSILVEACRLALVTRWAGDHHIGFWKKRIDRVLLNLLIENIQDLSEEHVSSLDKQISIAKEGLKTNHQFCVRGYVWDILGWLTIHSGENFNPLIHGSELYINLIIICACLTFEDVIKKWCRIYHKYVDDSFQSEPAARAVLMMIYSPCNYISSQARLIFSETYSSDHFRNLVHTLEYTSSLESYGSFDKIQLIINLIGLIAFLSLPHQHALESKYIKTVAFLVKRCLGNDMDVSRFGLAPHLHATLYEKSCCCMHADDWEGSNILLFYGLWGLAEMVHQSTSLQNTSHISTVDMQYFEGQLISELLEICSNASFTHGLRWYASYILSHFGIYGFPNELGKRVGRCLDEKEYADIQLIVANGDTLSVHGVILAVRCSSLLPPEVLLVKEKRIDDQPIREVRLSSHVDYEALVKLLEYAYVGYFHAGEEIVKKLKILAKRCNLQPLLRMLHRQSPKWGTSFPSFDLTSSLVSAGSCFWDVILESKQDKLERWTCCICSHSVLHLHVHKVVLQSGCDYLLGLFRSGMKESHSEIIKLPISWEAAGKLVHWFYSNELPKPPCGCLWDNMDDEQKLVSLESYVELYWLSEFWILEDVQEACWNVILSCLDNAKQLSIKILKMAGNLSLWKLADLAVTHLAPSYSQLRDSCELADLDDSLVHLIWSASTQLSQNG 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0811 1040 SUPERFAMILY POZ domain 703 819 IPR011333 -
Lele12g0811 1040 Gene3D Potassium Channel Kv1.1; Chain A 705 822 IPR011333 -
Lele12g0811 1040 ProSiteProfiles BTB domain profile. 723 797 IPR000210 GO:0005515
Lele12g0811 1040 PANTHER OS06G0674800 PROTEIN 42 1039 IPR044953 -
Lele12g0811 1040 SUPERFAMILY POZ domain 872 972 IPR011333 -
Lele12g0811 1040 SMART BTB_4 723 827 IPR000210 GO:0005515
Lele12g0811 1040 SMART BTB_4 860 975 IPR000210 GO:0005515
Lele12g0811 1040 Pfam BTB/POZ domain 717 817 IPR000210 GO:0005515
Lele12g0811 1040 Pfam BTB/POZ domain 871 935 IPR000210 GO:0005515
Lele12g0811 1040 Gene3D Potassium Channel Kv1.1; Chain A 841 1015 IPR011333 -
Lele12g0811 1040 ProSiteProfiles BTB domain profile. 847 928 IPR000210 GO:0005515
Lele12g0811 1040 CDD BTB_POZ_ZBTB_KLHL-like 872 924 - -
Lele12g0811 1040 SUPERFAMILY ARM repeat 82 527 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0811 Lele-ChrLele12 16140087 16145731 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele12g0811 BTB 2.3e-05 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0505 09 3757722 3758440 Lele12g0811 12 16140087 16145731 hybridization
Lele10g0467 10 3324625 3328916 Lele12g0811 12 16140087 16145731 hybridization