Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0808 ATGGCCACTCTGCTGAATACGGTATCTCCACCTGCAAATCTATCATCAAAAACAAAAGAGAACTGTGATTCCCAGATTCTAAACATCCGTAAGATTTCCCTCAACAGGGGTTTTCCCAGAGTTTTGGCTTCTACCCAGATGACTATTTCTTCCAAGGATGCTGTTTTTACTCTGCCCAATTGGAGAGCAGGGAAGAGTGATCCTAAAAGTAAGGAGCTCAGGCTTACTAATGCATTTCTGTATTTAGAGTATATGGTGGCTTTTGTTTGCAAGGCTAACAAGCTGAGGAAAGCTGTTAGAATGATGGAGATGACGATAGGTTCAGGGCGATGGGACGAGGCGAATGAGCTATTAGCAGAGATGTATGAAGAGGATCAGTCTCCCTCTGTTGTTACCTACAACATATTAATTACTTCTCTTGCCCTCCATGGAAGAATAGAACATGCTTTCAAGGTGTTGGATGAGATGACAAAGAGTGGATTTAAGGCAACTGCCACTAGCTATAATCCAATTATTGCTCATCTCTGCAAGGAAGATTCTCATACTTATTCATCTTTGGTAAGAGGAATCCGTAGGGAAGGAATGTTTGATGGAGCTATTGAGATATTCAGGATTTTGGAAGAAAATATGCACAAGCCTGATCATACCGAAAATTATAACGCGCTTTCACTTGGCCTTTGTAAATCTCATAGATTAGACTTGTCACTGGAGATATTTCAGATGATGATTGATGAAGGATGTATGCCTAATGAAACTACTTATACCGTTCTCATTGAAGGGCTCGTTTCGGGAGAAGAAACGGATATGGCAGCCAAGCGTTTGAAAGAGTTGCATCAAAAGGAGGTCCTGAGTCAAAGTACTGCAGAGAGACTTATTATGCAGTATGACCTCCAAGATTTGGCAGATTAG 909 0.4125 MATLLNTVSPPANLSSKTKENCDSQILNIRKISLNRGFPRVLASTQMTISSKDAVFTLPNWRAGKSDPKSKELRLTNAFLYLEYMVAFVCKANKLRKAVRMMEMTIGSGRWDEANELLAEMYEEDQSPSVVTYNILITSLALHGRIEHAFKVLDEMTKSGFKATATSYNPIIAHLCKEDSHTYSSLVRGIRREGMFDGAIEIFRILEENMHKPDHTENYNALSLGLCKSHRLDLSLEIFQMMIDEGCMPNETTYTVLIEGLVSGEETDMAAKRLKELHQKEVLSQSTAERLIMQYDLQDLAD 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0808 302 Pfam PPR repeat family 219 262 IPR002885 -
Lele12g0808 302 Pfam PPR repeat family 128 177 IPR002885 -
Lele12g0808 302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Lele12g0808 302 TIGRFAM PPR: pentatricopeptide repeat domain 225 251 IPR002885 -
Lele12g0808 302 TIGRFAM PPR: pentatricopeptide repeat domain 131 164 IPR002885 -
Lele12g0808 302 TIGRFAM PPR: pentatricopeptide repeat domain 181 214 IPR002885 -
Lele12g0808 302 PANTHER ATPASE EXPRESSION PROTEIN 3 108 283 - -
Lele12g0808 302 Pfam PPR repeat 182 208 IPR002885 -
Lele12g0808 302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Lele12g0808 302 Gene3D Tetratricopeptide repeat domain 179 299 IPR011990 GO:0005515
Lele12g0808 302 Gene3D Tetratricopeptide repeat domain 40 178 IPR011990 GO:0005515
Lele12g0808 302 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0808 Lele-ChrLele12 16130806 16134446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0808 101 300 Glycosyltransferase AT1G05670 27.500 3.00e-17 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0808 12 16130806 16134446 Lele12g0808 12 16130806 16134446 ECH
Lele09g0508 09 3764437 3766140 Lele12g0808 12 16130806 16134446 hybridization
Lele10g0470 10 3336091 3336755 Lele12g0808 12 16130806 16134446 hybridization