Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0794 ATGCATATAATGGTGGGCAACGCTCAAGGAGCAATGGTTTATCTTGCTTCCCCTGTCAGTTTGGGAGGTCTAGTTGGAGTGAGTTCCTCTGGGAGGACTCAGTCAATTGGAAGGAGAATTTCTCTTTCTGGAGGAAACTTTAAAGGTAGGACATGGCCCTGTGTCTCCTTGTCCCTTTGTAGATATTCGGTGACTACGACTGATTTCATACCGGACCAAGGCAATGCAGTGTCCCTTGACTCTAACAGTGAAAGAGCAAGTACGGGTACTGGAGATAATGATGCTAGTTTTGTCCTTAAGCCACCTCCAAAGCCAGTATTGAAATCTTCAGACATCAAGGGTAACTCCATTTTAGGTGCAAGTTCCGAAGGATGGGATCCCTCCAAAGATAAGCAATTTGGTAATGAAAAGTTAGATGATGTTGAAGAGAGGAACAAGGTGATTGAGTCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGAAAATTCAAAGTTTGATGGCAAAAGAAATAATGGACCAGTGAGCAAATCAGCAGTATCTAATACAACCACTAATCCTAAGACTGATAAATTGGCAAACTCAACAACAAACCAGCTGTCTAGAACTGTGAAGAGCGTATGGCGTAAAGGGGACACAGTTGCTAATGTGCAGAAGGTGGCTAAGGAAGCACCCAAGCCTAAAACTAAGAATGGAGGAGGGAGATCTCAAACAGGAAGTGGAGGAAAGGTGGCATTTCAGTCGCCTACTCCACCACGAGCTCCTCAGCCACCATCTAGACCTCACCCTTTGTTACAATCTAAGCCATCTGTAGCTCCCCCACCCATCAAAAAACCTATTCTGAAGGACAATGGAGCTGCTGGAACATCTGTTAAAGATAAAGAAAGGAAAGGGCCAATTTTGATTGACAAGTTTGCTAGCAAGAAACCAGTAGTTGATCCTCTAATAGCTCAAGCTGTTCTAGCTCCTACAAAACTAGGAAAGGGCCCTCCTCCTGGAAAGTTTAAAGATGATTACCGAAAGAAAGGTTCTCCAACTGGAGGACCAAGGAGAAGAGTATTAAATGATGATGTCGAGCCCGATGAGGATACATCAGAACTTGATGTATCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAGTGGAGTAAAGCAAGTCGAAAGGCAGCAAGACTTCAGGCTGCCAAGGAGGCAGCTCCTGTCAAAGTAGAAATTCTAGAGGTCAGTGATAAAGGTATGCTGATAGAGGAGTTAGCCTACAACTTGGCAATTGGTGAAGGTGAAATCCTGGGTTATCTATACTCCAAGGGGATTAAACCAGATGGGGTGCAAACTCTAGACAAAGATATGGTGAAGATGATTTGTAGAGAGCAAGGTGTGGAAGTCATAGATGCCGATCCTGTCAGAGTTGAAGGATTGGTGAAGAAAAGGGAAATTCTAGATGAAGATGATCTCGACAAACTCAAAGATAGGCCTCCTGTTATTACTATAATGGGTCATGTGGATCATGGCAAGACAACTCTTTTGGACCATATTCGGAAGAGCAAGGTGGCTGCTTCTGAAGCCGGTGGTATTACACAAGGAATCGGGGCATATAAAGTTCAGGTTCCTGTTGATGACAAATTGCTGCCTTGTGTTTTTCTTGACACACCTGGGCATGAGGCATTTGGGGCTATGAGAGCTCGAGGAGCAAGTGTAACAGATATTGCTATTGTTGTCGTGGCTGCTGATGATGGAATTCGTCCTCAAACAAATGAAGCCATTGCTCATGCCAAAGCAGCAGGAGTACCCATAATTATGGCTATAAACAAGATAGATAAAGATGGAGCAAATCCTGACCGAGTCATGCAAGAGCTATCTTCAATTGGTCTAATGCCTGAAGACTGGGGTGGGGACATCCCAATGGTTCAGATAAGCGCTCTTAAAGGGGAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCAAATCCTGATAGAAGTGCGAAGGGCACAGTCATTGAGGCTGGTCTGGATAAATCAAAAGGACCATTTGCTACTTTTATAGTGCAGAATGGTACCCTTAAAAGGGGAGACGTGGTAGTCTGCGGAGAAGCTTTTGGGAAGGTGCGGGCTTTATTTGATGATGTTGAAGAACGTGTTGATTCAGCTGCACCCTCTATACCTGTCCAGATTATTGGATTGAATAATGTTCCCATTGCTGGGGATGAATTTGAGGTTGTTAACTCCCTTGATGCTGCCCGTGAAAAAGCAGAGTCCCGTGCTGAATCATTGAGAAATGAGCGTATTTCAGCTAAAGCAGGGGATGGGAAGGTCACCCTTTCATCTTTAGCTTCTGCAGTTTCGTCAGGAAAGCTTTCTGGATTAGACTTGCACCAACTAAACATTATCTTGAAGGTTGACCTTCAGGGATCCGTTGAAGCTATCAGACAAGCCCTACAGGTGCTACCACAAGATAATGTCACCTTGAAGTTTTTGTTGGAAGCAACTGGTGATGTTAGCACCAGTGATGTTGACCTTGCAGTTGCAAGCAAAGCTATTATTTTGGCATTTAATGTCAGAGTACCCGGTTCTGTAAAAAGCCACGCAGAAAATAAGTTGGTGGAGATTAGATCATATAAAGTTATTTATGACCTAATTGATGATGTGCGGACTGCAATGGAAGGACTTCTGGAGCCTGTGGAGGAACAAGTAACGATTGGCTCAGCTGAAGTAAGGGCTACGTTCAGCAGTGGTAGTGGCCGTGTTGCTGGATGCATGGTTAATGAGGGAAAAGTAACGAAAGAATGTGGCATTCGAGTCATCCGTAAGGGAAAGGTTGTTCACGTTGGAGTTCTTGATTCTTTGAGACGAGTAAAGGAGAGTGTGAAAGAGGTAAGTGCTGGTCTAGAGTGTGGAATTGGTTTAGAAGATTACGACGACTGGGAAGAGGGAGATATTATCGAGGCATTCAACACGGTTCAGAAGAAGCGGACCCTTGAAGAGGCATCGGCTTCAATGGCTGTCGCAGTGGAAGAAGTAGGAGTAGAGTTGTAG 3063 0.4443 MHIMVGNAQGAMVYLASPVSLGGLVGVSSSGRTQSIGRRISLSGGNFKGRTWPCVSLSLCRYSVTTTDFIPDQGNAVSLDSNSERASTGTGDNDASFVLKPPPKPVLKSSDIKGNSILGASSEGWDPSKDKQFGNEKLDDVEERNKVIESLGEVLEKAEKLENSKFDGKRNNGPVSKSAVSNTTTNPKTDKLANSTTNQLSRTVKSVWRKGDTVANVQKVAKEAPKPKTKNGGGRSQTGSGGKVAFQSPTPPRAPQPPSRPHPLLQSKPSVAPPPIKKPILKDNGAAGTSVKDKERKGPILIDKFASKKPVVDPLIAQAVLAPTKLGKGPPPGKFKDDYRKKGSPTGGPRRRVLNDDVEPDEDTSELDVSIPGAATARKGRKWSKASRKAARLQAAKEAAPVKVEILEVSDKGMLIEELAYNLAIGEGEILGYLYSKGIKPDGVQTLDKDMVKMICREQGVEVIDADPVRVEGLVKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDHIRKSKVAASEAGGITQGIGAYKVQVPVDDKLLPCVFLDTPGHEAFGAMRARGASVTDIAIVVVAADDGIRPQTNEAIAHAKAAGVPIIMAINKIDKDGANPDRVMQELSSIGLMPEDWGGDIPMVQISALKGENVDDLLETVMLVAELQELKANPDRSAKGTVIEAGLDKSKGPFATFIVQNGTLKRGDVVVCGEAFGKVRALFDDVEERVDSAAPSIPVQIIGLNNVPIAGDEFEVVNSLDAAREKAESRAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSVEAIRQALQVLPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILAFNVRVPGSVKSHAENKLVEIRSYKVIYDLIDDVRTAMEGLLEPVEEQVTIGSAEVRATFSSGSGRVAGCMVNEGKVTKECGIRVIRKGKVVHVGVLDSLRRVKESVKEVSAGLECGIGLEDYDDWEEGDIIEAFNTVQKKRTLEEASASMAVAVEEVGVEL 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0794 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 667 IPR027417 -
Lele12g0794 1020 CDD IF2_mtIF2_II 671 765 IPR044145 -
Lele12g0794 1020 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 798 910 IPR036925 -
Lele12g0794 1020 MobiDBLite consensus disorder prediction 323 367 - -
Lele12g0794 1020 MobiDBLite consensus disorder prediction 331 345 - -
Lele12g0794 1020 Hamap Translation initiation factor IF-2 [infB]. 7 1000 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lele12g0794 1020 SUPERFAMILY Translation proteins 667 751 IPR009000 -
Lele12g0794 1020 TIGRFAM small_GTP: small GTP-binding protein domain 493 654 IPR005225 GO:0005525
Lele12g0794 1020 FunFam Translation initiation factor IF-2 488 666 - -
Lele12g0794 1020 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 491 664 IPR000795 GO:0003924|GO:0005525
Lele12g0794 1020 ProSitePatterns Initiation factor 2 signature. 953 975 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lele12g0794 1020 MobiDBLite consensus disorder prediction 162 301 - -
Lele12g0794 1020 MobiDBLite consensus disorder prediction 169 206 - -
Lele12g0794 1020 CDD IF2_eIF5B 494 660 - -
Lele12g0794 1020 FunFam Translation initiation factor IF-2 799 904 - -
Lele12g0794 1020 MobiDBLite consensus disorder prediction 250 276 - -
Lele12g0794 1020 SUPERFAMILY Translation proteins 906 1000 IPR009000 -
Lele12g0794 1020 FunFam Translation initiation factor IF-2 904 1001 - -
Lele12g0794 1020 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 190 1008 IPR015760 -
Lele12g0794 1020 Gene3D Translation factors 667 783 - -
Lele12g0794 1020 CDD mtIF2_IVc 910 992 - -
Lele12g0794 1020 Gene3D - 799 904 IPR036925 -
Lele12g0794 1020 MobiDBLite consensus disorder prediction 73 94 - -
Lele12g0794 1020 Gene3D - 488 666 IPR027417 -
Lele12g0794 1020 Gene3D Translation factors 905 1001 - -
Lele12g0794 1020 Coils Coil 750 777 - -
Lele12g0794 1020 FunFam Translation initiation factor IF-2 667 785 - -
Lele12g0794 1020 PRINTS GTP-binding elongation factor signature 563 574 IPR000795 GO:0003924|GO:0005525
Lele12g0794 1020 PRINTS GTP-binding elongation factor signature 599 608 IPR000795 GO:0003924|GO:0005525
Lele12g0794 1020 PRINTS GTP-binding elongation factor signature 547 557 IPR000795 GO:0003924|GO:0005525
Lele12g0794 1020 PRINTS GTP-binding elongation factor signature 495 508 IPR000795 GO:0003924|GO:0005525
Lele12g0794 1020 Pfam Translation-initiation factor 2 799 892 IPR023115 -
Lele12g0794 1020 Pfam Elongation factor Tu GTP binding domain 496 656 IPR000795 GO:0003924|GO:0005525
Lele12g0794 1020 MobiDBLite consensus disorder prediction 231 245 - -
Lele12g0794 1020 MobiDBLite consensus disorder prediction 73 138 - -
Lele12g0794 1020 TIGRFAM IF-2: translation initiation factor IF-2 413 1002 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0794 Lele-ChrLele12 15990318 15996928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0794 473 890 Eukaryotic Initiation Factors Gene Family AT1G76810 30.408 3.68e-29 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0794 12 15990318 15996928 Lele12g0794 12 15990318 15996928 ECH
Lele09g0522 09 3875447 3882076 Lele12g0794 12 15990318 15996928 hybridization
Lele10g0486 10 3460819 3467419 Lele12g0794 12 15990318 15996928 hybridization