Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0784 ATGGCCTTGCAATTGCACATGACTTGGCTGCCGAGTCTTCTCACTCAGAAGCGCAAGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTCCAGTGTCTCACCTTCACACCTCCTCTTGCCAATTTCTGTCTTCGAAACCAGCACTCTTCCCTTTGCGACTCTGCTTCGGAGGAAAGGAAGCGGGAGTGTCCTTTTTGTCTACTAGAGAAACGGATTGTTCGTTCTTTGAGAGTGGATCTCGCCCAAGACGCTCCGTTGAAGATCCAGAGCTGTCTCAGGATTTTTGCCGAGCACTTTCGTTGTGGTCGTCAGGAGGATGCTCACGAGTTCCTGAGGTACGTTATCGATGCCTGCCACAACACTTGCCTTCGCCTCAAGAAGTTGAGGCGCAAGGGGGGCGACGCGGCTGGCAGTGGTAATGGCAACAATACCGTTGTTAAGGAGATATTTGGGGGAGCCTTGCAGAGCCAGGTGAAGTGTCTCTCTTGTGGCTATGAGTCCAATAAGGTGGATGAGATTATGGATATCAGTCTTGATGTTTTGCATAGCAATTCGCTTAAAGATGCTATGCAAAGGTTCTTTCAGCCTGAGATTTTAGATGGGAATAATAAGTACAAATGTGACAATTGCAAGAAATTGGTGGCGGCTAAGAAACAAATGTCTATACTTGAAGCCCCTAATGTCCTCGTAATACAACTTAAGAGATTTGAGGGCATATTGGGTGGGAAGATCGACAAGGCTGTTGCATTTGAAGACATTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCGATGCCAGAATATAGGCTCTTTGGTATCATTGTCCATTCTGGATACTCCCCAGAATCTGGCCATTATTATGCTTATATAAAGGATGCAAAGGGCCGGTGGTATTGCTGTGATGATTCTTCTGTCTCACTTGCTACCCTGAAAGAAGTTTTGTCAGAAAAGGTTTACATACTTTTTTTTTCTCGCACTAACCAAAGGTCAGTGCCAATTAGAAATGGTTTTGCTTCAAACGGTTCAAGGTCTCATGACTCTCATCACAATAATGGAAGTCAGGCATCTGAGTGTCCAAAATCTGACGCACCAACAAAAGTAGTGCATGCAAAATTGAGTTCTCAACAATCTTCTTGGAAGGACATGTCTTCCATGTCCAAGACTGGTAAAGAGCCTTCTAGCCCACGAGTGAAGTTTAATTTTAATGGAAATTCTACTTACAAAAGAGGCCAAGAAAGTATCAATGGGAAAGTTGATGTCCCGTTGAACCAGCCTGTAGTAACTAATGGACATGTGAAAGACTCAGTTGCTTCGGAGAATGATAAGAAAGATTCTTCATCAGTCAGGAATGGTTTTGAAAAAATTAAAGTAGACGCTGTTGACAACTTAAAAAGGAAGGATTTCGTGTTAACAAATAAAAACACTGGTATTCATTCTGTCGAAAAATATCCTAGAAAGTCAGATCTAAGGGATAACTATGGGAGAAGCAGAGCAATGTCAGGTAAAGGACCTGACAACTATAAGCTAGAAGGCAATGGTGTCATCAACAAAGCTAAATCATTGGAGAATAAGAGGAAGGAACCAGTGGGTACCAGCATTTTGCTTGCGCATGATGATCAGTCTGAAGCAAGAGTTCAGGAACTGAAAGACATGCTTAAAAAAGAGGCAAAGTCAGTCTTAAGATCCTGTGGCTGGACAGATAAGGTGTATGACTATATGTCTTCTAGAAAGAGGTTACGTGCACAAGAAGCTGGAAATTCATCAAGTGAAGATGAAATAAAGAAGTTGCTAATAAGTGAGGCTAAGGGAGCTTTCATATCACAGATCCCCGAGTCATTGAAAGAGGATCTGATTGGTCATCTCCGATTATTTAGCAAAGAAAAGACATGA 1926 0.433 MALQLHMTWLPSLLTQKRKTDHPVGLRNLGNSCYLNSVLQCLTFTPPLANFCLRNQHSSLCDSASEERKRECPFCLLEKRIVRSLRVDLAQDAPLKIQSCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDAAGSGNGNNTVVKEIFGGALQSQVKCLSCGYESNKVDEIMDISLDVLHSNSLKDAMQRFFQPEILDGNNKYKCDNCKKLVAAKKQMSILEAPNVLVIQLKRFEGILGGKIDKAVAFEDILVLSSFMCKASQDPMPEYRLFGIIVHSGYSPESGHYYAYIKDAKGRWYCCDDSSVSLATLKEVLSEKVYILFFSRTNQRSVPIRNGFASNGSRSHDSHHNNGSQASECPKSDAPTKVVHAKLSSQQSSWKDMSSMSKTGKEPSSPRVKFNFNGNSTYKRGQESINGKVDVPLNQPVVTNGHVKDSVASENDKKDSSSVRNGFEKIKVDAVDNLKRKDFVLTNKNTGIHSVEKYPRKSDLRDNYGRSRAMSGKGPDNYKLEGNGVINKAKSLENKRKEPVGTSILLAHDDQSEARVQELKDMLKKEAKSVLRSCGWTDKVYDYMSSRKRLRAQEAGNSSSEDEIKKLLISEAKGAFISQIPESLKEDLIGHLRLFSKEKT 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0784 641 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Lele12g0784 641 SUPERFAMILY Cysteine proteinases 17 337 IPR038765 -
Lele12g0784 641 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 338 IPR028889 -
Lele12g0784 641 Gene3D Cysteine proteinases 17 340 - -
Lele12g0784 641 MobiDBLite consensus disorder prediction 345 372 - -
Lele12g0784 641 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 280 298 IPR018200 GO:0004843|GO:0006511
Lele12g0784 641 Pfam Ubiquitin carboxyl-terminal hydrolase 24 335 IPR001394 GO:0004843|GO:0016579
Lele12g0784 641 MobiDBLite consensus disorder prediction 433 460 - -
Lele12g0784 641 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 340 - -
Lele12g0784 641 FunFam Ubiquitin carboxyl-terminal hydrolase 25 18 340 - -
Lele12g0784 641 CDD Peptidase_C19E 23 336 - -
Lele12g0784 641 MobiDBLite consensus disorder prediction 345 413 - -
Lele12g0784 641 MobiDBLite consensus disorder prediction 380 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0784 Lele-ChrLele12 15907983 15912335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0784 23 347 Miscellaneous Gene Families AT2G24640 36.970 1.54e-60 208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0784 12 15907983 15912335 Lele12g0784 12 15907983 15912335 ECH
Lele09g0539 09 4033746 4038452 Lele12g0784 12 15907983 15912335 hybridization
Lele10g0497 10 3530183 3536187 Lele12g0784 12 15907983 15912335 hybridization