Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0776 ATGGCTGCGGTTGCTGAGATTTCCGTTGATTCAGTCGCTGCCACCAAATTGGACTCAAAACCGATGCCTGAAACCGAATTTAATGTACAGAAGCTTGTTGATATGTTTACAAAGCTGAATCCTTCAGCTGAAGAGTTTTTCCCATCGTCGCATTCTCATAACCATTCTCATAATCAATTTCATCTGAGCTCTAGTCAGTTCTTTCCCAACAATTTTCTGGTTAAGCCATCGGTTAATGACAATTACTCAAACAACCAAAGGAGAAGAATCAATTTCAATCAGGGAAGAAGGCTGAATGGAAGAGTGCATAAGGCCCAAAGAGAAGATAGCGTTAGAAGAACAGTATATGTTTCTGATATTGATCAGCAGGTAACTGAGGAGCGGCTTGCTGCCTTATTTTCCAGTTGTGGACAAGTGATTGATTGCCGAATTTGTGGTGATCCACATTCAATCCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAACGAAGTGCAAGAGCAGCTCTAAACCTTGGTGGTACTGTTCTTGGCTACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTACCCAGATCGGATGATGAGCGGGAGATGTGTAGCAGGACTGTTTATTGTACAAATATTGACAAAAAGGTTACGTGCTTGAGGCTGCTAGGGGATCATGCGCATTCAACCCGAATTGCTTTTGTGGAGTTTGCAATTTGGGATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGTCAAGGATCGCTCATCCGATGTCATGTTGACTGCTCGGTCTGGTCAAATGCTTAGAGAGACTGTTTGGTCAACTTTTCGGATGAGAGATGTGAAGACTGTGGAAGGGGTGGTGAAACTTCCCTTTGTTTCAGTTATTTCCATCTTTTTCTGTCAACAGCAGTTCCTGTTTGTTGCCTTAAACTTGCCATCTTGA 981 0.4322 MAAVAEISVDSVAATKLDSKPMPETEFNVQKLVDMFTKLNPSAEEFFPSSHSHNHSHNQFHLSSSQFFPNNFLVKPSVNDNYSNNQRRRINFNQGRRLNGRVHKAQREDSVRRTVYVSDIDQQVTEERLAALFSSCGQVIDCRICGDPHSILRFAFVEFADERSARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVTCLRLLGDHAHSTRIAFVEFAIWDALGNSAYQGKSFKDTCEVKDRSSDVMLTARSGQMLRETVWSTFRMRDVKTVEGVVKLPFVSVISIFFCQQQFLFVALNLPS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0776 326 SMART rrm1_1 114 184 IPR000504 GO:0003723
Lele12g0776 326 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Lele12g0776 326 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 292 - -
Lele12g0776 326 Gene3D - 75 189 IPR012677 -
Lele12g0776 326 Pfam Ataxin-2 C-terminal region 35 51 IPR009818 -
Lele12g0776 326 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Lele12g0776 326 CDD RRM1_CID8_like 111 190 IPR034823 -
Lele12g0776 326 FunFam Polyadenylate-binding protein-interacting protein 11 79 190 - -
Lele12g0776 326 SUPERFAMILY RNA-binding domain, RBD 113 242 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0776 Lele-ChrLele12 15825072 15829082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0776 114 221 Eukaryotic Initiation Factors Gene Family AT1G71770 28.440 7.92e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0776 12 15825072 15829082 Lele12g0776 12 15825072 15829082 ECH
Lele09g0547 09 4116722 4120506 Lele12g0776 12 15825072 15829082 hybridization
Lele10g0503 10 3618938 3622747 Lele12g0776 12 15825072 15829082 hybridization