Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0769 ATGTACAGTGCGTGCCAACATCTTTTGATGATTACTATTACGCGTCATAGACGCTTCCCGGACACGTGGCTTAAGGTCGCAGTCAACGTTTCAACTCAGCTCCTTTCTCGGGAAGCGGTTCGGCACATCGGCGATCGCCAGTCACCTCGCGACCTTTTCCTCGACGACACGGTTCTTTCTGATTCTGAATCAGTGAGGTGGTTGAACCATGCAATTGAAAACATATGGCCCATATGTATGGAACAAATTACCTCTCAGAAGATTTTGCTCCCAATCATACCTTGGTTCTTGGAGAAGTACAGACCCTGGACTGCAAAAAAAGCCGTGGTTCAGCATCTGTCCCTGGGGAGAAACCCACCTTTATTTACTGAAATGAGGGTGCTTCGTCAAAATGGTGATGATCACTTAGTTCTGGAATTAGGAATGAATTTTCTGACGGCTGATGATATGAGTGCAATAATAGCTGTAAAACTAAGGAAAAGATTAGGCTTTGGGATGAGGGCAAAGCTGCACATAACGGGTATGCATGTTGAAGGGAAGGTTTTGGTTGGGGTAAAATTTCGTCAAACATGGCCTTTCCTTAGTCGTTTGCGTGTATGCTTTGTTGAACCTCCATACTTCCAAATGACTGTTAAGCCCATATTTACTCATGGGCTTGATGTGACAGTAGTTCCTGGGATTGCTGGATGGCTACCTAATATGCTGGTTGTTGACGTTGAGAAATTTGCTTCACCTCAGCCAGAGCCCTGGTTCTCCATCAATGAGAAGGAGCCTGTTGCCTATGCCCATGTCGAAGTTGTTGAAGGATCTGACATGAAGCCATCAGACCTAAATGGGTTAGCAGATCCATATGTAAAAGGTCATTTAGGTGGCTACAGATTCAGGACAAATATTCAAAGGAAAACACTTGCTCCAAAATGGCTAGAAGAATTTAAAATCCCCATTATAACATGGGAGTGTGCTAATGTGTTGGCTATTGAAGTTTGTGACAAGGACCACTTTTATGATGATAACCTCGGAAACTGTTCTGTCAACCTCAGTGATTTGAGGGATGGCCAGAGACATGATATGTGGTTACCCCTTCAGAATATTAAAACTGGGAGGCTGCACCTGGCTATAAGTATTCTTGAAGACAATTCAAAGGAGGTTGATAAAACATGTAACGAGGAAGCAATGGATGCTGAACAGAAAAGGAATTCCTTTGCAAATGAGATTTACAATAAAAATTCATTGTCATCTGTTTCATCAGAAAAATTCCAAAAAGTTGCAGATAACTATGAGCCTATTGATGTTGAAGGGCAAAAGGAGACTGGAATTTGGGTTCATCAACCAGGTAGTGAAGTATCGCAAACATGGGAACCTAGAAAAGGGAGAAGCCGACGCCTTGATACTGAAATTCACAGGGAGCCCAATGATTTATGTGGAAGTTTTAATTCAGCAGCATCTGGATCCTCAAACAATGACTGCAGCAGTCCTGATGATAACCCAGAGCATAAGCACAGAATAAAATCAATTTGGAAGGGACTGCACAAGATTGGGCCAGTGTTTCGGAGGGCCCCAAAGAATGAGCCTCCAACACAGACATCAGCTCGTGCTGTTGGAGAGGCAGAGGCTGTTCCATCTCCGCTTGCAAACATTAAGGCTGAGAATGCCAACGAGATTGGTGTGCTCTTTGTTATGGAGGATAACATTTCTGGGCTTGCCTCGGGTAAGGTTCAGATGGAAGCAACATCCCCTAAAAGCAATAGTTCTGAAAGCCCAGGCAAGGGAAATGCCAAAGATAAGGCAAAAAATATGCTGAAGCATGCTGCAGGGAAATCAAGAAAATCTGAAGTTGACTCACTTCGAGAAACAACTAGAGTCTCAGAAGAATCTGACTCTTCTGATGATGATGATTCCCTTTCAGTTCCATCACCCAGAGATGGAAGAATTCCCTTTGCTTCCAAAGTCATTGTTTCTTTCAACAATGACCCCTCCAATTCCAGTGAGAATGTTGTGGTTCAGACACATTTGCCTGACGTTACTTTGGGCAATGAAGTTCCGACAAAGAAGCTGGGTGTTGAAGAAGAGCCTGCAATGCATGGCAGCCCGGACAAATCTTCAAAAGATTATGTTGAAACAAAGCATGGCTGCCCTGACAAATCTTCAGAAGATTATGTTGAAACAAAGCATGACAGATTCCAGCTGTATCTCTTCGGCAATGGAGTTATCACCTCAAATCCAGACATGCCAACGAAGCTTCTTTTCCAGCGATTATATCAACTAAAGCATTCGATTTCTATAATTAGTTTCCCTCACATCTCCGAATCTGTTCATACCGATGCCAAAAGGGTTACAGGCAGTAAATTGACCGCATACTGGAATTCTCAGATCACCAAAAATGGTAGAAACGGTAATATCAAGGAGGCAGAGACAGTATTTAGTAGGATGCCTAGAAAGAGTACTGTCTCTTGGACTGCCATGCTCACTGCCTATGCTGAAAATGGCCAAATTGCAAATGCCCGCAAAATGTTCGAAGAAATGCCCGAACGAGCCTCTGCTTCCTACAATGCTATGATTTCTGCTTATATCCGTAATGGATGTAACGTCCATGAAGCTTATAGGTTGTTTTCTATGATGAATGAACGCAACGCCATCTCATATGCTGCTATGATTACTGGTTTTGTTCGTGCAGGAATGTTCCGTGAGGCTGAAAAATTGTACTCTGAGGCTCCGTTAGAGTTGCGGGATCCAGCTTGTTCGAATGCATTGATAATTGGGCTTTTGAAGATAGATAGAATAAATGAGGCGTTACGGCTTTTTGTGGGCATGACTGAGAGAGACGTGTTTTCTTGGACTTCTATGATTGATGGTTTGTGTAGAGATGGAAGGATTGTTGATGCTAGAAACTTGTTTGATAGAATTCCTGAGAGAAACGTGGTTTCTTGGAGTGCAATGATAGATGGGGCAAAAAGAATATTCAGCTCCATAAGCAAAAAAGACATAGTTTCTTGGAATTCCTTAATCTCTGGATATGTTCATAACGATGAAACAGAAGCAGCTTACAGGCTTTTCCTGAATATGCCAGAGAAGGACTTGATTTCTTGGACGGCCATGATCACTGGATTCTGTAACAACGGAAGAGTTCGAAAGGCCATTGAGCTATTTGAAATGTCCCCGGAGAAAGATGATATTGTCTGGACTGCCATTATTTCTGGATTCGTGAAGAATGCGCAATATGAGAAAGCTTTGCATTGGTATGTTCAGATGCTTCGAGGAGGATGCAGGCCAAATCCTTTAACACTAAGCAGTGTTCTATCAGCTTCAGCCGCTTTGGTGATACTGAATCAAGGGATGCAAATTCATACTAATGTTGTGAAGATGAACTTCGAATATGATTTATCTGTACAAAATTCTCTTGTATCAATATATTCCAAATGTGGGAATGTAATTGCTGCCTACAGGATCTTCACAGGCATCATTGAACCAAACACTGTTTCTTTCAACTCAATCATTACTGGGTTTGCCCAAAATGGCTTTGGTGAAGAAGCCATTAAAATCTACAAGAAAATGCAGTGTGAAGGCCATGAACCCAACCATGTTACTTTCCTTGCTGTTCTTTCCGCCTTCACTCATACAGGACTAGTACAAGAAGGATGGAATTACTTCTACTCCATGAAATCTGAATATGGAATTGAACCAGGACCTGATCACTATGCGTGCATGGTCAATCTCCTCGGCCGCGCCGGTATGCTAGATGAAGCAGTTGATTTGATAAGGTCAATGCCAGTGAAACCTCATTCTGGTGTTTGGGGTGCTGTTCTTGGGGCAAGCCAGACCTATTCACGTCTTGACATTGCCAAGCTTGCAGCACAATCTATTGTTGAAATGGAACCTTCTAATGCAAATCCTTATGTAGTGATGTCAAACTTGTATTCTGTTTCTGGGAAACAGGCTGAGGGGAACCAAGTCAGAATCACCAAGAACCTGAAAGGAATCAAGAAAAGCCCAGTGAAACGGACGCTGCAGGGAAGCAAGCTGTTTGTGGGGGAGAAGTCTGTTTTGGGAATCAAAGAATCTTTTGAAGGAGGAGGAGGAGAAGACACTGGACGCGCCAAGTTTTCTGTGGATTTCGCTCTGGTTGCATTATTGGGTACATGGTGA 4143 0.4292 MYSACQHLLMITITRHRRFPDTWLKVAVNVSTQLLSREAVRHIGDRQSPRDLFLDDTVLSDSESVRWLNHAIENIWPICMEQITSQKILLPIIPWFLEKYRPWTAKKAVVQHLSLGRNPPLFTEMRVLRQNGDDHLVLELGMNFLTADDMSAIIAVKLRKRLGFGMRAKLHITGMHVEGKVLVGVKFRQTWPFLSRLRVCFVEPPYFQMTVKPIFTHGLDVTVVPGIAGWLPNMLVVDVEKFASPQPEPWFSINEKEPVAYAHVEVVEGSDMKPSDLNGLADPYVKGHLGGYRFRTNIQRKTLAPKWLEEFKIPIITWECANVLAIEVCDKDHFYDDNLGNCSVNLSDLRDGQRHDMWLPLQNIKTGRLHLAISILEDNSKEVDKTCNEEAMDAEQKRNSFANEIYNKNSLSSVSSEKFQKVADNYEPIDVEGQKETGIWVHQPGSEVSQTWEPRKGRSRRLDTEIHREPNDLCGSFNSAASGSSNNDCSSPDDNPEHKHRIKSIWKGLHKIGPVFRRAPKNEPPTQTSARAVGEAEAVPSPLANIKAENANEIGVLFVMEDNISGLASGKVQMEATSPKSNSSESPGKGNAKDKAKNMLKHAAGKSRKSEVDSLRETTRVSEESDSSDDDDSLSVPSPRDGRIPFASKVIVSFNNDPSNSSENVVVQTHLPDVTLGNEVPTKKLGVEEEPAMHGSPDKSSKDYVETKHGCPDKSSEDYVETKHDRFQLYLFGNGVITSNPDMPTKLLFQRLYQLKHSISIISFPHISESVHTDAKRVTGSKLTAYWNSQITKNGRNGNIKEAETVFSRMPRKSTVSWTAMLTAYAENGQIANARKMFEEMPERASASYNAMISAYIRNGCNVHEAYRLFSMMNERNAISYAAMITGFVRAGMFREAEKLYSEAPLELRDPACSNALIIGLLKIDRINEALRLFVGMTERDVFSWTSMIDGLCRDGRIVDARNLFDRIPERNVVSWSAMIDGAKRIFSSISKKDIVSWNSLISGYVHNDETEAAYRLFLNMPEKDLISWTAMITGFCNNGRVRKAIELFEMSPEKDDIVWTAIISGFVKNAQYEKALHWYVQMLRGGCRPNPLTLSSVLSASAALVILNQGMQIHTNVVKMNFEYDLSVQNSLVSIYSKCGNVIAAYRIFTGIIEPNTVSFNSIITGFAQNGFGEEAIKIYKKMQCEGHEPNHVTFLAVLSAFTHTGLVQEGWNYFYSMKSEYGIEPGPDHYACMVNLLGRAGMLDEAVDLIRSMPVKPHSGVWGAVLGASQTYSRLDIAKLAAQSIVEMEPSNANPYVVMSNLYSVSGKQAEGNQVRITKNLKGIKKSPVKRTLQGSKLFVGEKSVLGIKESFEGGGGEDTGRAKFSVDFALVALLGTW 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0769 1380 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 259 375 IPR035892 -
Lele12g0769 1380 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 61 255 IPR031468 GO:0008289
Lele12g0769 1380 MobiDBLite consensus disorder prediction 572 589 - -
Lele12g0769 1380 MobiDBLite consensus disorder prediction 590 623 - -
Lele12g0769 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 814 848 IPR002885 -
Lele12g0769 1380 Gene3D Tetratricopeptide repeat domain 766 908 IPR011990 GO:0005515
Lele12g0769 1380 Pfam E motif 1274 1330 IPR046848 -
Lele12g0769 1380 Gene3D Tetratricopeptide repeat domain 1064 1347 IPR011990 GO:0005515
Lele12g0769 1380 MobiDBLite consensus disorder prediction 436 499 - -
Lele12g0769 1380 MobiDBLite consensus disorder prediction 453 470 - -
Lele12g0769 1380 Pfam PPR repeat 787 813 IPR002885 -
Lele12g0769 1380 Pfam PPR repeat 816 844 IPR002885 -
Lele12g0769 1380 Pfam PPR repeat 848 876 IPR002885 -
Lele12g0769 1380 Pfam PPR repeat 1232 1256 IPR002885 -
Lele12g0769 1380 Pfam PPR repeat 879 903 IPR002885 -
Lele12g0769 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1157 1191 IPR002885 -
Lele12g0769 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1056 1090 IPR002885 -
Lele12g0769 1380 MobiDBLite consensus disorder prediction 686 717 - -
Lele12g0769 1380 MobiDBLite consensus disorder prediction 475 491 - -
Lele12g0769 1380 Gene3D Tetratricopeptide repeat domain 984 1057 IPR011990 GO:0005515
Lele12g0769 1380 Gene3D Tetratricopeptide repeat domain 909 983 IPR011990 GO:0005515
Lele12g0769 1380 Gene3D C2 domain 250 377 IPR035892 -
Lele12g0769 1380 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 57 703 - -
Lele12g0769 1380 MobiDBLite consensus disorder prediction 515 536 - -
Lele12g0769 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 941 975 IPR002885 -
Lele12g0769 1380 Pfam C2 domain 263 361 IPR000008 -
Lele12g0769 1380 ProSiteProfiles C2 domain profile. 245 359 IPR000008 -
Lele12g0769 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 877 911 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 1159 1192 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 1027 1051 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 1232 1255 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 996 1025 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 816 844 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 879 903 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 943 974 IPR002885 -
Lele12g0769 1380 TIGRFAM PPR: pentatricopeptide repeat domain 1058 1091 IPR002885 -
Lele12g0769 1380 MobiDBLite consensus disorder prediction 572 642 - -
Lele12g0769 1380 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 1128 1342 - -
Lele12g0769 1380 Pfam PPR repeat family 1056 1101 IPR002885 -
Lele12g0769 1380 Pfam PPR repeat family 1156 1203 IPR002885 -
Lele12g0769 1380 SMART C2_3c 261 358 IPR000008 -
Lele12g0769 1380 Pfam PPR repeat 1025 1050 IPR002885 -
Lele12g0769 1380 Pfam PPR repeat 940 967 IPR002885 -
Lele12g0769 1380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 994 1028 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0769 Lele-ChrLele12 15737048 15751529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0769 769 907 Glycoside Hydrolase AT3G49170 27.703 8.65e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0769 12 15737048 15751529 Lele12g0769 12 15737048 15751529 ECH
Lele09g0555 09 4195593 4201133 Lele12g0769 12 15737048 15751529 hybridization
Lele10g0511 10 3701692 3707502 Lele12g0769 12 15737048 15751529 hybridization