Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0755 ATGTCACATCCTGTAGGTCTACAAAAGTTCTTAAGGCGTATCAGCTTAACTTTGTGGATCCAAATGAGCAAGTGTCTGGTTTTAGCCTTTTACATCACCATATGCTGCATCTCTTTTATCATTTCCAAAATCATCATCTCAGTTCTCCTCTACAAAAGATGGAAAAGAAAGCACATGACTTATGAAGAAGCTTGTCCAGGTGGGAAGATGGTAATATTTAGGTGTTCAGTGCTACAATCAATGGCATCTGATATGGTTTTAAAGAAGACACTGAAACTGAGCAACAAGGACATTATTGGAAGTGGTGGTTATGGGATAGTTTATAAACTGCAAATAGATGAAACCAAAGCTTTTGCAGTGAAAAGGCTCAACAAAGGGACTGCAGATAGAGAGAGAGGTTTTGAGAGAGAGGTGGAAGCAATGGCAGACATAAAACACCGCAATATTGTGACTCTTCATGGTTACTATACCGCCCCTCATTACAACCTTCTCATTTATGAGCTCATGTCTAATGGAAGCTTAGATTCTTTTCTACATGGGAGATCAAAGAACAAGTTGTTTTTGGATTGGCCAACAAGGTACAGAATAGCCCTAGGGGCTGCTAGGGGAATATCATATCTTCACCATGATTGCATCCCTCACATTATCCACAGAGATATCAAATCAAGTAACATATTGCTGGATCACAACATGGATGCTCGAGTTTCTGATTTCGGATTGGCCACCTTAATGGACCCCAACAGAACTCATGTTACAACCATTGTTGCCGGAACTTTCGGATACTTAGCCCCTGAATACTTTGATACGGGAAGAGCAACTGTAAAAGGGGATGTTTACAGCTTCGGGGTTGTGTTATTGGAGCTCTTAACGGGGAAAAAACCCTGCGATGAAGCATTTATAGAGGAAGGCAGCAAGCTTGTCACATGGGTGAAGGCTGTAGTTCAAGAGAGGAAGGAGGAGTTAGTTATTGACAATACCATGGGGTCTTGTCCCATGAAAGAGGTTGACAATGTGTTCAACGTTGCAATGAAGTGTCTTGAACAAGATCCTCTCAAGAGGCCAACCATGGCTGAGGTTGTCACCTTGCTGGAGCAAACAAACCCACACAAACTTGTTAAAGCTTCCTCCTGA 1131 0.42 MSHPVGLQKFLRRISLTLWIQMSKCLVLAFYITICCISFIISKIIISVLLYKRWKRKHMTYEEACPGGKMVIFRCSVLQSMASDMVLKKTLKLSNKDIIGSGGYGIVYKLQIDETKAFAVKRLNKGTADRERGFEREVEAMADIKHRNIVTLHGYYTAPHYNLLIYELMSNGSLDSFLHGRSKNKLFLDWPTRYRIALGAARGISYLHHDCIPHIIHRDIKSSNILLDHNMDARVSDFGLATLMDPNRTHVTTIVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPCDEAFIEEGSKLVTWVKAVVQERKEELVIDNTMGSCPMKEVDNVFNVAMKCLEQDPLKRPTMAEVVTLLEQTNPHKLVKASS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0755 376 SUPERFAMILY Protein kinase-like (PK-like) 85 366 IPR011009 -
Lele12g0755 376 Gene3D Transferase(Phosphotransferase) domain 1 169 374 - -
Lele12g0755 376 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 366 - -
Lele12g0755 376 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 169 375 - -
Lele12g0755 376 SMART serkin_6 93 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0755 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lele12g0755 376 FunFam Receptor-like serine/threonine-protein kinase 64 168 - -
Lele12g0755 376 Pfam Protein kinase domain 95 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele12g0755 376 Gene3D Phosphorylase Kinase; domain 1 69 168 - -
Lele12g0755 376 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
Lele12g0755 376 ProSiteProfiles Protein kinase domain profile. 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0755 Lele-ChrLele12 15640694 15644044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0755 67 365 Receptor kinase-like Gene Family AT2G35620 49.164 2.20e-96 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lele12g0755 Pkinase 7.5e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0571 09 4326368 4334001 Lele12g0755 12 15640694 15644044 hybridization
Lele10g0522 10 3776751 3779876 Lele12g0755 12 15640694 15644044 hybridization