Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0743 ATGCCTGGGAATAAGTATAACGGTAATCCTAATCATTTTCCAGGTCGTGTTGGACGACTTGTCAGAGAAAGAGAGCTAAGAAAAATCAGCAGGGCTTCTCATTTCAATGGGTCAGCTGATAATAATAATAATAGGATTACTGAACCGTTTGAGCATAACCAGCGTTTAAGAGAAGATAATAATTCAGGGGCTTCTCATGCACAATACCTGGAGGGAACTGCCAGGCCGCTTAGTGAGGGATGTGAAAGACAAGATGTGAGGCCTTATAGACAACGACTTTTGGTGGTGGCCAACAGGCTGCCAGTCTCAGCAGTTAGGAGAGGCGAAGATTCATGGTCTCTGGAGATTAGTGCTGGAGGTCTAGTTACCGCTCTTTTAGGTGTGAAGGAATTTGAGGCAAGGTGGATAGGGTGGGCTGGTGTCAATGTGCCAGACGAGATTGGACAGAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGCATTCCAGTATTTCTTGATGAAGAGATTGTTCACCAATATTATAATGGTTACTGCAACAACATGTTGTGGCCCCTTTTTCATTACCTTGGGCTACCCCAAGAAGATCGCCTTGCTACAACACGGAGCTTCCAGTCTCAGTTTGCAGCGTACAAGCAAGCTAACCAAATGTTTGCTGATGTCGTTAACAAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGACTACCATCTTATGTTTCTTCCAAAATGTTTAAAGGAATATAACAGTAAAATGAAAGTTGGCTGGTTTCTTCACACCCCATTTCCTTCTTCTGAAATTCATAGGACATTACCATCACGTTCAGAGCTCCTCCATTCTGTTCTCGCTGCTGATTTAGTAGGATTTCACACCTATGATTACGCACGCCATTTTGTTAGTGCCTGTACTCGCATTCTTGGACTTGAGGGCACTCCTGAAGGGGTTGAGGATCAGGGGAGATTGACTCGAGTTGCTGCATTTCCAATTGGGATAGACTCTGAACGATTCATACGTGCACTTGAACTTACTCAAGTGAAGGAACATATCAAAGAATTGGAACAAAGATTTGAGGGTAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGGATTCCCCAGAAAATTCTAGCATTTGAAAAGTTTTTGGAAGAGAATGCTTATTGGCGTGATAAAGTAGTTTTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATTAATGGAAGATTTGGAACATTGACTGCTGTTCCTATACATCATCTGGACCGTTCACTTGATTTTCATGCACTATGTGCTTTATATGCTGTTACTGATGTAGCTTTGGTCACATCTTTGAGGGATGGGATGAATCTTGTCAGTTATGAATTTGTAGCCTGCCAGGAGAAAAAGAAAGGCGTTCTCATTCTTAGTGAATTTGCTGGCGCTGCACAGTCTCTAGGTGCGGGAGCAATTCTGGTTAACCCCTGGAACATCATAGAAGTTGCAGCTGCAATTGCGCAGGCTCTGAATATGTCATCTGGGGAAAGAGAGAAACGTCATAAGCACAATTATGTACATGTAACTACCCACACTGCTCAAGAATGGGCTGAGACTTTTGTAAGTGAACTAAATGATACTGTGGTCGAGGCACAACTAAGGACAAGACAAGTTCCACCCCCACTTCCAACCAAGACTACAATTGAACGCTATCTGCAGTCAACTAATCGATTGCTTATATTGGGATTCAATGCAACTTTAACTGAACCAGTCGAAAAGAAAGGCGATCAGATTAAGGAAATGGAACTCAAGGTGCATCCAGAATTAAAACAACCATTGACAGCACTTTGCAATGACCCGAAGACAACAATTGTTGTGCTTAGTGGAAGTGGTCGAAATGTCCTATATAATAGTTTTAAGGAATACAACATGTGGCTAGCCGCAGAGAACGGGATGTTTCTACGCCCTGCAAAGGGAGAATGGATGACAACAATGCCAGAGCATTTGAATATGGAATGGGTTGACAGTGTGAAGCATGTTTTTGAATACTTCACAGAGAGAACCCCCCGGTCTCATTTTGATGTTGAAGAAAGGGAGACCTCGCTTGTATGGAACTACAAATATGCCGATGTTGAGTTTGGAAGACTTCAAGCAAGAGATATGTTGCAGCATCTCTGGACTGGTCCAATTTCCAATGCATCAGTTGATGTTGTTCAAGGTAGCCGATCAGTCGAAGTGCGAGCTGTTGGTGTTACGAAGGGGGCAGCCATTGACCGCATCTTGGGTGAGATAGTTCACAGTAAATTCATGACAGCACCAATCGATTATGTTCTTTGTATAGGACATTTCCTATCAAAGGATGAAGATGTTTATTCCTTTTTCGAACCGGAGCTTCCTTCCGGAGGCGTGGGTGTTGCGCGAGCCAAGGCATCGGAAGCAGCTAAGTTTCCAGCTGAGAGACGATACTCTCTGAATATCCCAACCAGTACTAAAACTGGAACAAAGTCATCATCTCAAAATAAGGCACAACGGCCAGTGTCAAATTCTGAGAAGAAAACCACAAACCATAACTGTAATGCACCAAGGAAGCCGGCACCAGAGAAGATATCATGGAATGTGCTTGACCTCAACAAGGAGAATTACTTCTCTTGTGCCGTTGGCCGAACCCGAACAAATGCTCGCTATACGCTTGGATCTTCAGATGATGTTGTTTCATTCCTCAAGGAACTGGCTCAAGCTTCTTCTCCAAACCATTTATCAACCAATTAA 2805 0.4321 MPGNKYNGNPNHFPGRVGRLVRERELRKISRASHFNGSADNNNNRITEPFEHNQRLREDNNSGASHAQYLEGTARPLSEGCERQDVRPYRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVTALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNMLWPLFHYLGLPQEDRLATTRSFQSQFAAYKQANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSERFIRALELTQVKEHIKELEQRFEGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNIIEVAAAIAQALNMSSGEREKRHKHNYVHVTTHTAQEWAETFVSELNDTVVEAQLRTRQVPPPLPTKTTIERYLQSTNRLLILGFNATLTEPVEKKGDQIKEMELKVHPELKQPLTALCNDPKTTIVVLSGSGRNVLYNSFKEYNMWLAAENGMFLRPAKGEWMTTMPEHLNMEWVDSVKHVFEYFTERTPRSHFDVEERETSLVWNYKYADVEFGRLQARDMLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVHSKFMTAPIDYVLCIGHFLSKDEDVYSFFEPELPSGGVGVARAKASEAAKFPAERRYSLNIPTSTKTGTKSSSQNKAQRPVSNSEKKTTNHNCNAPRKPAPEKISWNVLDLNKENYFSCAVGRTRTNARYTLGSSDDVVSFLKELAQASSPNHLSTN 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0743 934 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 339 541 - -
Lele12g0743 934 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 84 338 - -
Lele12g0743 934 CDD HAD_TPP 590 828 - -
Lele12g0743 934 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 84 924 IPR001830 GO:0003824|GO:0005992
Lele12g0743 934 Gene3D - 679 761 - -
Lele12g0743 934 MobiDBLite consensus disorder prediction 836 877 - -
Lele12g0743 934 Gene3D Glycogen Phosphorylase B; 84 339 - -
Lele12g0743 934 MobiDBLite consensus disorder prediction 836 872 - -
Lele12g0743 934 Gene3D Glycogen Phosphorylase B; 340 541 - -
Lele12g0743 934 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 92 557 IPR012766 GO:0003825|GO:0005992
Lele12g0743 934 CDD GT20_TPS 92 557 IPR001830 GO:0003824|GO:0005992
Lele12g0743 934 Gene3D - 613 805 IPR023214 -
Lele12g0743 934 FunFam Alpha,alpha-trehalose-phosphate synthase 613 684 - -
Lele12g0743 934 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 91 560 - -
Lele12g0743 934 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 679 761 - -
Lele12g0743 934 Pfam Trehalose-phosphatase 612 824 IPR003337 GO:0003824|GO:0005992
Lele12g0743 934 Pfam Glycosyltransferase family 20 92 557 IPR001830 GO:0003824|GO:0005992
Lele12g0743 934 SUPERFAMILY HAD-like 589 828 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0743 Lele-ChrLele12 15563799 15572033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0743 1 927 Trehalose Biosynthesis Gene Families AT1G78580 78.384 0.0 1498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0591 11 5797295 5806222 Lele12g0743 12 15563799 15572033 ECH
Lele12g0743 12 15563799 15572033 Lele12g0743 12 15563799 15572033 ECH
Lele09g0580 09 4396599 4404496 Lele12g0743 12 15563799 15572033 hybridization
Lele10g0532 10 3851832 3859919 Lele12g0743 12 15563799 15572033 hybridization