Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0739 ATGAAGATTCAGTGCAGCGTGTGTGAGGCTTCGGAGGCTAAGGTTTTGTGTTGCGCCGACGACGCGGCTCTGTGTTGGGAATGTGACGAGAAAGTTCATGCAGCTAACAAGCTTGCCGGCAAGCACGAGAGAGTGCCTCTTTCTTCCTCTGGCTCTCATATGCCCAAATGTGATATTTGTCAGGAATCTTTTGGCTATTTCTTCTGTCTAGAGGACAGGGCTTTATTCTGCAGAAAATGTGATGTGGCAATACACAGAGCAAATTCCTATGTTTCCACTCATCAGAGGTTTCTGTTGGCTGGTATAAGAGTAGGACTTGAAGCTACCGAGCCCGGTGCTTCCTCGTCTTATGCTCAGTCACAGTCTGAGGAGAAGAGGTCAGATACGAAATCTTCATCTGCCTCTAGAAGGGTTTCTTCAGTGCCTGAGTCATCTGAACACAATGAAGTTATACCTTCCCAAGGTGGTGGAGGAACTGGGCAGTTTCCACCTTCTAAGGTGTCTTATGGTGGCGGTTCAACTCCTGGAAACTTATCAAACTGGCCCATTGATGATTTTTTTGGTTTAAATGAATTCAGTCAGAATTACAATTGCATGGACAATGAACCATCCAAGGATGACAGTGGGAAGCCTGGGGATTGTGATTCTCCTGGTTTTAAATCCAGCGAAGAGGAAATAGATGACGACGACGACGGTGACGACTTGAGGCGATTTTTGGATTCATCTCGGACAGTTCCTCAGATTCCTTCACCTCCTACAGCTTCAGGATTAAATTGGCCTAAAGACACTCAATATACACATGACAATGCTATGTTTGTTCAGGTTCCAGACGTGCTTCTTTCTGATTCCCAACAGTTCAACCGTGTTCAGAATTGGCTTATTCTATCAAAACGACGGAGGCTTCAACCATAA 912 0.455 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHERVPLSSSGSHMPKCDICQESFGYFFCLEDRALFCRKCDVAIHRANSYVSTHQRFLLAGIRVGLEATEPGASSSYAQSQSEEKRSDTKSSSASRRVSSVPESSEHNEVIPSQGGGGTGQFPPSKVSYGGGSTPGNLSNWPIDDFFGLNEFSQNYNCMDNEPSKDDSGKPGDCDSPGFKSSEEEIDDDDDGDDLRRFLDSSRTVPQIPSPPTASGLNWPKDTQYTHDNAMFVQVPDVLLSDSQQFNRVQNWLILSKRRRLQP 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0739 303 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lele12g0739 303 MobiDBLite consensus disorder prediction 198 262 - -
Lele12g0739 303 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele12g0739 303 FunFam B-box zinc finger protein 22 1 93 - -
Lele12g0739 303 CDD Bbox1_BBX-like 5 47 - -
Lele12g0739 303 MobiDBLite consensus disorder prediction 203 221 - -
Lele12g0739 303 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 278 - -
Lele12g0739 303 Gene3D Classic Zinc Finger 1 93 - -
Lele12g0739 303 MobiDBLite consensus disorder prediction 133 173 - -
Lele12g0739 303 CDD Bbox1_BBX-like 56 99 - -
Lele12g0739 303 MobiDBLite consensus disorder prediction 243 262 - -
Lele12g0739 303 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lele12g0739 303 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lele12g0739 303 MobiDBLite consensus disorder prediction 113 173 - -
Lele12g0739 303 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele12g0739 303 SMART bboxneu5 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0739 Lele-ChrLele12 15524653 15526681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0739 1 301 C2C2-CO-like Transcription Factor Family AT1G78600 45.317 8.38e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele12g0739 zf-B_box 7.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0739 12 15524653 15526681 Lele12g0739 12 15524653 15526681 ECH
Lele09g0584 09 4442674 4445119 Lele12g0739 12 15524653 15526681 hybridization
Lele10g0534 10 3900225 3902288 Lele12g0739 12 15524653 15526681 hybridization