Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0713 ATGTCTCTCATCAGAGTTTTTCGTTCTCGGAAGTTCTCCAGATCCTTTAGGGGAGCTGGGGTTCTGGATGAGGATGACAGTCGGAACGGAGTCGGTGCGGCCGATGGGGCTGAGGCCGGTGAGGAGCCAGCGTACGGCAATGCGTGGTCCACCATGCTGCCGGAGCTTCTCGGCGAGATTATACGGCGGGTGGAGGTCAGCGAGGAGCGGTGGCCCCTCCGCCAAAACGTTGTCTCTTGTGCTTGCGTCTGCAAGAGGTGGAGGGATATGACTCGTGAGATCGTTCGGTCCCCTTCTCAGAGCGGCAAAATTACTTTCCCTTCCTGCCTTAAACAGCCAGGACCACGTGATTCGCCCCACCAATGTCTTATAAAGCGAAACAAGAGGACTTCAACATTTTACCTATATCTTGCCCTTACACCAACTTTCACAGATAAAGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCTAATACCGAATATATCATATCACTTGATCCTGAAGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGGTTTATCAGAAAAGCATGTCACTACAGTTCTATCTCGGATTTCCTTGGTACCAACTTCACAATCTATGACAGCCAGCCACCCCATAATGGTGCGAAGCCATCAAGCAGCAGGACGAGCCGTAGATTTACCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGACAAGTCTCATACAAGTTCAACATTTTGAAATCAAGGGGGCCTAGAAGGATGGCTTGCACAATGAAGTGCCCCTTTCCTTTGTCAGGAGAGAGTTCAGAAAACAAAAATCTGGACACCGCTGATAAGACGAACAATAAAGAACAAGTCGTTGCTCCTGGCTACTCGATATTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAATGTTGGTGCTTGAATTTCCATGGCCGCGTAACTGTGGCGTCAGTGAAGAATTTTCAGCTGGTGGCCACAGTGGATCAGAGCCAACCAGATGGAAAAGGAGACGAGGAAACAGTTCTCCTGCAGTTTGGGAAGGTTGGAGATGATACTTTCACCATGGATTATAGGCAGCCCATATCAGCCTTCCAGGCTTTTGGCATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTAA 1176 0.4872 MSLIRVFRSRKFSRSFRGAGVLDEDDSRNGVGAADGAEAGEEPAYGNAWSTMLPELLGEIIRRVEVSEERWPLRQNVVSCACVCKRWRDMTREIVRSPSQSGKITFPSCLKQPGPRDSPHQCLIKRNKRTSTFYLYLALTPTFTDKGKFLLAARRYRRGANTEYIISLDPEDFSQGSNAYVGKLRFIRKACHYSSISDFLGTNFTIYDSQPPHNGAKPSSSRTSRRFTSKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMACTMKCPFPLSGESSENKNLDTADKTNNKEQVVAPGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPDGKGDEETVLLQFGKVGDDTFTMDYRQPISAFQAFGICLTSFGTKLACE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0713 391 Gene3D Tubby Protein; Chain A 105 391 IPR025659 -
Lele12g0713 391 PANTHER TUBBY-RELATED 27 389 - -
Lele12g0713 391 MobiDBLite consensus disorder prediction 210 231 - -
Lele12g0713 391 Pfam Tub family 110 386 IPR000007 -
Lele12g0713 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
Lele12g0713 391 Pfam F-box domain 54 96 IPR001810 GO:0005515
Lele12g0713 391 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Lele12g0713 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Lele12g0713 391 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Lele12g0713 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Lele12g0713 391 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Lele12g0713 391 PRINTS Tubby superfamily signature 191 215 IPR000007 -
Lele12g0713 391 PRINTS Tubby superfamily signature 240 267 IPR000007 -
Lele12g0713 391 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Lele12g0713 391 SUPERFAMILY Tubby C-terminal domain-like 98 391 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0713 Lele-ChrLele12 15307681 15310693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0713 1 391 TUB Transcription Factor Family AT1G53320 68.922 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele12g0713 Tub 7.3e-98 CL0395