Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0706 ATGTCGCATTCTGGGAAGTCCGATTCGGAGCTAGGTTTAGGCGCTCTCAAAGATCGATTTCGGGAGTCCTTGAGGTGCGAGGCGAACAAGCCGGATTTTCGTGAGCTCGATCTAGGGTCGCCGGTTTCGCCATTGCGGACCCGTCAGAGTGGACCAACTGCGAGTGGACTCACCACTACTACCAGCAGTAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCAATGGGTTCAACCCGGTCTCTAAAAGATCCGATTCTGGTGCGAACAATCACTCCGGTGAGCTTTCTGGTTCCAGCGAGAGCAGTCCTACTGCCGCCGAGAGCCTTCGATCTGGGGGGAATGCCAGGAACTTAAAACCGGGTCACTCAAGATCCGATGCCGGAACCACCGCACCTTCAATCTATACGGGTCAAAGCTCATCCGTCACATCACCGGCGTTGAATGTTCTTCCTACCGGCAATATCTGTCCGTCTGGCAGGATTCTGAAGACTGGCATGGCGTCTAATCGGACCTCCAGGTCGGACGTTTTGGGCTCCGGTACGGCCAATTATGGTCACGGAAGCATAATGCGGGGCGGTGGAACATCCAAACATACTGCTGTAGAGGCGGCAAGTATGGCAAATGCAAGGGCAGCCGGTGGTGGCGGTTTTAAAGAACCGTTCAAGAAAGCGGCGGCAGGTTTGGATCCGGAAGAGGTAAAAAGAGCGGGGAACGAGCAGTACAAGAGGGGTAGCTTTACAGAAGCATTGAATCTATACGATCGGGCAATTGGACTGTCCCCAGGTAATGCCGCCTACCGGAGCAACCGTGCGGCTGCATTGACGGCATTGGGTCGGTTGAGTGAGGCGGTGAGGGAGTGTGAGGAGGCTGTGAGATTGGATTCTAATTATGGAAGAGCGCACCAGCGTCTTGCTTCTCTTTTTCTCCGGTTAGGACAAGTTGAGAATGCGAGGAAGCACCTATTTGGTCATGGACTGCAGCCGGATCCTTCTGAGTTGAAGAAGCTGCAATCGGTGGAGAAGCATATCAACAAATGTACTGATTTTCGAAGGATAGGTGATTGGAAAAGTGTCCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCATCTCCTCAGCTCTTTATGTGTAGAGCGGAAGCCCTTTTAAAGCTCCACCAAATTGATGATGCCGAATTGATTCTGTCAGCTATTCCAAAAACAGAATCACATTCTAAATCCTCGTCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAAGCTTATTCTTTCTTTGTTAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGCCTGATTGATTCCCGGAACATTGAAGTTGCTGTTTTGCTCAGCAATGTAAGGATGGTGGCTAGAGCGCGAGCTCGTGGTAATGATCTTTTCAAGTCTGAAAGGTTCACCGAAGCTTGCTCTGCATATGAGGAAGGTTTAAGACTGGACCCTTCAAATGCTGTTCTCTATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGACTGCAATCAAGCGTTACACATCCAGCCAAATTACACAAAAGCCCTTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGAAAGGTGGGAAGAAGCATTCAAAGATTATGAGGTCTTACGAAGTGAACTTCCAGATGACAATGAAGTTGCTGAAGCTCATTTCCATGCATACGTTGCATTGAAGAAATCTCGTGGGGAAGAAGTTTATAATTTGAAATTTGGTGGTGAAGTGGAAGGAGTATCTGGTCTTGAGCAATTTAGAGCTGCAATTTCTTTACCAGGGATTGACTGTAACCTTAACTCTGCAGGTGTATCTGTTGTCCATTTTGAAGGTGAATCTGATTCGCAATGCAAACAATTGTCACCATTTGTGAATACACTTTGCAGTCGATATCCTTCTGTTAGCTTTCTCAAGGTGGATATTCAAAAAAGCCCAGCAATTGCAGCTGCTGAGAATGTTAGGTTGGTGCCAACTTTCAAGATATACAAAAATGGCAGCCGTGTGAAGGAAATTGTTTGCCCCAGCCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCACTTAG 2136 0.4817 MSHSGKSDSELGLGALKDRFRESLRCEANKPDFRELDLGSPVSPLRTRQSGPTASGLTTTTSSSSSSSGSVSGRNGFNPVSKRSDSGANNHSGELSGSSESSPTAAESLRSGGNARNLKPGHSRSDAGTTAPSIYTGQSSSVTSPALNVLPTGNICPSGRILKTGMASNRTSRSDVLGSGTANYGHGSIMRGGGTSKHTAVEAASMANARAAGGGGFKEPFKKAAAGLDPEEVKRAGNEQYKRGSFTEALNLYDRAIGLSPGNAAYRSNRAAALTALGRLSEAVRECEEAVRLDSNYGRAHQRLASLFLRLGQVENARKHLFGHGLQPDPSELKKLQSVEKHINKCTDFRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEALLKLHQIDDAELILSAIPKTESHSKSSSQARFFGMLSEAYSFFVRAQIEMALGRFENAVTAAEKAGLIDSRNIEVAVLLSNVRMVARARARGNDLFKSERFTEACSAYEEGLRLDPSNAVLYCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLERWEEAFKDYEVLRSELPDDNEVAEAHFHAYVALKKSRGEEVYNLKFGGEVEGVSGLEQFRAAISLPGIDCNLNSAGVSVVHFEGESDSQCKQLSPFVNTLCSRYPSVSFLKVDIQKSPAIAAAENVRLVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYST 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0706 711 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Lele12g0706 711 CDD TRX_family 607 703 - -
Lele12g0706 711 FunFam TPR repeat-containing thioredoxin TTL4 594 710 - -
Lele12g0706 711 Pfam Tetratricopeptide repeat 236 296 - -
Lele12g0706 711 SUPERFAMILY Thioredoxin-like 618 697 IPR036249 -
Lele12g0706 711 MobiDBLite consensus disorder prediction 123 146 - -
Lele12g0706 711 Pfam Thioredoxin 625 702 IPR013766 -
Lele12g0706 711 SUPERFAMILY TPR-like 230 457 IPR011990 GO:0005515
Lele12g0706 711 Gene3D Glutaredoxin 603 710 - -
Lele12g0706 711 SUPERFAMILY TPR-like 472 585 IPR011990 GO:0005515
Lele12g0706 711 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 708 IPR044534 -
Lele12g0706 711 MobiDBLite consensus disorder prediction 26 146 - -
Lele12g0706 711 ProSiteProfiles TPR repeat profile. 502 535 IPR019734 GO:0005515
Lele12g0706 711 Pfam Tetratricopeptide repeat 502 535 IPR001440 GO:0005515
Lele12g0706 711 SMART tpr_5 230 263 IPR019734 GO:0005515
Lele12g0706 711 SMART tpr_5 468 501 IPR019734 GO:0005515
Lele12g0706 711 SMART tpr_5 502 535 IPR019734 GO:0005515
Lele12g0706 711 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele12g0706 711 SMART tpr_5 422 455 IPR019734 GO:0005515
Lele12g0706 711 SMART tpr_5 536 569 IPR019734 GO:0005515
Lele12g0706 711 MobiDBLite consensus disorder prediction 43 111 - -
Lele12g0706 711 Gene3D Tetratricopeptide repeat domain 229 588 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0706 Lele-ChrLele12 15250150 15253233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0706 467 612 U-box Gene Family AT3G07370 29.508 8.75e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0706 12 15250150 15253233 Lele12g0706 12 15250150 15253233 ECH
Lele09g0616 09 4696846 4699964 Lele12g0706 12 15250150 15253233 hybridization
Lele10g0567 10 4149073 4152153 Lele12g0706 12 15250150 15253233 hybridization