Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0704 ATGTTACAAAACAAAGAAATAGAGGATTTATATGATGACAACTTTGAAGGTGCTAATGATGAAAGACGGATTTTTACTGAGGTATTTTTCAGTAAAGACAGAGTTCAGCCTAGTCAGAGGTGTCTTGTTACTGGAGTCATCAACTTTGAATGTGAATCTGGTAAAAACACAAATACTTCACTATGCTCTAGCAATGAAAACTCAGTTATAAAAAGCCCCTCTTCTTCAAAAGTGACACATTCTGAGGATAATTGTGATGTAATTCAGAATTTGAAAGAGACTGCTCTTGACTGCATGCCTGAGAGATTCGATCATGAAGGCCCAAATCACAAGGATGTAAATGTTAAACGCATGAAATTTTCCCCGCAAGAACTTCCCTGTAGCAGATCCAATTTAAAAAAGGCTTTGAGTTCACCAACACTTTCAAAAGAACATGTTACTGACATGTCTGGTGCTGTAATAGACTTTGATAGTAAACCACTTTCACTTCGTTTAGTTGAATCATCAAAGCTTGGTGTGATATCCAGTTGCTATCTGTTGAAGCATAGCATCATGCAGAACAAAAATAGAGCTAAGGAAGATGGATATGTCTTAAATTGTACAAAAACCACCGCAGATGGAAATTTGGCCAAAGAAATGGTTGCAAGTAAAGTGGCTGCTTCTCCTGTTTCTGAAGAGAGCTCCGCAAATAAGCTTGTAGTAACAAGTCCATCAAGCACTGCTGCGGAGAAATCTGGATCTCATTTCCAATTTGAGGAGATGCCTAAAGGATTTTTATCCTATGACATGGATAAGTCAAATTTATTATTGACACCAGACCTCAATAAGGACCCCCGTGATTTATTGCATTACCGCAGTGTTCAGTTGCTTATGATGGCTGGATGGTCTATTGAGAAGCGTAAGAGACCTTGTAGACGCACCTTTGAGTCAGTCTATAGGACACCAGAAGGAAGGCCAGTCCGTGAGTTTATAAAAGCTTGGAGGTTATGTGGTCAGTTTTTGTCTGTTGACAAATACAATTCAATGCAGGATAATTGTAAAGAATGGGCCGACATTGGTCAATTCTGGTCTGATCTATCCAATGCACTGATAAATGTTGAAAAGAAAATGAACCACTCGGAGCCTGCTGCTATGTTAGCTTATCAATGGTGTCTCCTGGATCCTTTTATAGTAGTAATTTTTATTAAAAGAAAGATTGGCGCACTGAAAAAGGGGGAGCTAGTGAAGGTAACTCAAAGTATAGTTTCTAGAAATTATAGGATGGCACATACTGCCAAAAGTTCAGCTTGGGACTGGGAGGATACTCCTGCAGCTCTATTTGATCCGAAACATGACTCAGGTTTTCTTTTTGATCCTTCTACTGCCACTGGGAGCAAACTCGCGTCTCTGCTCAACTACCATGCCTGTAATCAGAAAACTGGGGATGGAAATAACTTAGGACATGAACAGACAAGTAGTGGGGGAATAAAACTTCCAATATATGGATGTAATAGTATTGATAACCAGGAAGACGTGTACCTAGAGCACAATGCTGAGAGCAAAGGAAATCAATGTAGGGAAGTGTCTGTGTATGAAAGAAGCAGTCTTGGTGTAGTCTTGTTACCTGATGATGGGTTGGGTTTTACTGGTACACAGTCAAGTGCTTGTACTTCCAATGTTACTTCAACTTCTGGAAATTCAAGTCAGGTATATAGAGGGCTCAAAGTTAACACTTGTCAGGAAAGTAATGTTAGAAATTTTGAAAGCTCTGATGAAAAGTACTTGGAAAATTTGGTGGAAACAAGTAAGAGAGTAGATGGGGATGTGCCAATGGACAAGGCAGAGGAAAAGGATCCATCAGACGGCAAAGTTCAGGATCTTTATGGAAGTTATCTGCAGGAATCCCTGAATAGATATCCACACGGAGCAAGACATGGCTTGGTTCATTGTCATGCCTCAGAGGCTGTTCAGCAGTCTGAATATGGTGAGGAAGGGGGTGGAAAAAGCTCAAGAGCTTCTGTGCTTGAGACAGACAACACATGTGCTACCCCTGATGTTACTCTGGAAAAGAAGATCCGGAGGAAGTGTAAGAGGGTATCTGAAATCGAACTGAGTATGTTATATGAAAGTGACATGATGGGTTCAGTAGTTACTGATGAGGTCCAATTACTAAATGATGAAGCATGCGGTACTCACTTAGAATTTGAAGAGGGTGAGCATGTAGCTGACAATGCAGAGGATACAGGAGCCCACAGGAAATTATCATCAATCCGTTCATTCCAGCAACAACATATTGGGAGAACAAACGCAAAGTTTAGAAATAGTTGTCACAACTATGACGCTATAACTGAAAAACCAAAGTCTAGCGGATGCCAGATTGCAGATGATGACCTGTTGGTTTCAGCTATTCTTAAGAAAACAGGTTTCATATCAAAGACAACTCAAGGTGAATCTAAATCTAAATTCTGCAAATCAAGAGCTCAGAGAAAGCTGAAAAGGCAAAAGGGTCATTGCAGGTTGCTACCAAGGAACCTTGGCAATGAAGGGAAGCGCATTAGGGAAGGCAAGAGGTGTTATATTGGGACAAGAACAGTGCTATCATGGTTGATTGAGAATGGGATCATATCTATAAATGATGTGATTCAATACCGAAACCTTAAAGATAATGCTGTCATTAAGGATGGTAGGATTACCAGGGATGGTATTATATGCAAGTGCTGCAAAAAGTTGCTTACATTATCTGAGTTCAAGTTTCATGCTGGATATAGATTGAATCGCCCCTGCCTGAACCTTTTTATGGAGTCTGGTGAGCCCCTTACATTGTGCCTGCTTCAAGCTTGGTCTGCCGAATACAAGGCCAGGAAAAGTGGGAATCAAACTGTGAAAGCCAACGATGATGATAAAAATGATGATTCGTGTGGATTGTGTGGTGATGGCGGTGAGTTGATATGCTGTGATAACTGTCCATCAGCTTTTCATCTTGCTTGTTTGTCCACTCAGGATATCCCTGAAGGCGACTGGTACTGCACAAACTGCACTTGTCATATTTGTGAGAATTTTGTCGACGATAAAGAGGCTCCTGGTGATCGTGATGCCTTGCAATGTTTACAGTGTGAGCATAAATATCATGAAAAGTGTCTGAGTGGAGGCAGTAAACCAGAAGGGGAAGTTTCTGACGGTTGGTTTTGTAGTGGACGCTGTCAAGAGGTATACTCTGGTCTTCAATCTCGGGTTGGACTTGTTAATCATATTGATGGTGGCCTCTCATGGATGCTTCTTAGGTGCATCCAAGACGACCAAAAGGTTCATTCTGCCCAGTGGTTCGCCGTCAAGGCACTATGCAATACAAAATTAACTGTTGCCCTTACCATCATGGAGGAGTGCTTTTTGTCAATGGTGGATCCTAGAACAGGCATAGACATGATACCCCATGTTTTATACAATCGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAGAAAGATGTCTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCACTTATTGCAACTTGCAGTAGGTATCGTCGGCAGGGAATGTGCCGACTCCTTGTGAGTGCAGTTGAAGAGGTAGCAAAGCTTGTGATAGCAGCCATTCCAGATTTGGTGGGGACTTGGACCAAGGGCTTTGGATTCAAACCTGTAGGTGAAGATGAAAAGCAGAAACTGAACAAAATAAAGTTAATGGTTTTTCCTGGGACTGTATTACTTGAAAAACCCTTGTTCAGTGAAGATGAAACAGAAGATGACTTTTCCAAAGTAGGTGCTTATTGTAAAGAAATGGCGATGGCTGAATCATTGCAGCAAGATGTTGGCGCCAAGTCAGACTCCGAACATGGTTGCAGCAAGAATGGCACAGATTACAGAATTGAATCACTGCTGCAAGATGTAGAAAACAATTATACTGATGAACTCAGTACTAAGTCAGAAAGGGAACATGATTGCAGCAACAATTTCCCAGACTACAGAGCTGAGTCATCATTAGGATTGAAAGAAACAGCAGATAGGAATACCTATTTAAGTGGAGAGAAGATCATGGGCTTTGTAAACAACAATATGCAGGAATTGAGACTTAGCAGCAAAATGGAATCATCCACAAATGAGTCTGTGCAGCATTCTAGTGGGAACTGTTGCACTAACAAAGACGACACTGAATCAGAAGTAGTAAGAATTATGGAGAACAGGAATATCAAAGTGGGTGAAGGTCAGGAGAATGGCTTGCAGGGCCCTTTTTTGCAAATGTCCTGCAAAGCAGTAATAGGCAACCATTTTGATGTGGATAACATTATTGAATCCTCGGGCATGTATGATGAAACACGGCTTTCTTTGGAACAGAACTTGCAGGAGGCATGTGAGATGATGAATGAATGA 4416 0.4121 MLQNKEIEDLYDDNFEGANDERRIFTEVFFSKDRVQPSQRCLVTGVINFECESGKNTNTSLCSSNENSVIKSPSSSKVTHSEDNCDVIQNLKETALDCMPERFDHEGPNHKDVNVKRMKFSPQELPCSRSNLKKALSSPTLSKEHVTDMSGAVIDFDSKPLSLRLVESSKLGVISSCYLLKHSIMQNKNRAKEDGYVLNCTKTTADGNLAKEMVASKVAASPVSEESSANKLVVTSPSSTAAEKSGSHFQFEEMPKGFLSYDMDKSNLLLTPDLNKDPRDLLHYRSVQLLMMAGWSIEKRKRPCRRTFESVYRTPEGRPVREFIKAWRLCGQFLSVDKYNSMQDNCKEWADIGQFWSDLSNALINVEKKMNHSEPAAMLAYQWCLLDPFIVVIFIKRKIGALKKGELVKVTQSIVSRNYRMAHTAKSSAWDWEDTPAALFDPKHDSGFLFDPSTATGSKLASLLNYHACNQKTGDGNNLGHEQTSSGGIKLPIYGCNSIDNQEDVYLEHNAESKGNQCREVSVYERSSLGVVLLPDDGLGFTGTQSSACTSNVTSTSGNSSQVYRGLKVNTCQESNVRNFESSDEKYLENLVETSKRVDGDVPMDKAEEKDPSDGKVQDLYGSYLQESLNRYPHGARHGLVHCHASEAVQQSEYGEEGGGKSSRASVLETDNTCATPDVTLEKKIRRKCKRVSEIELSMLYESDMMGSVVTDEVQLLNDEACGTHLEFEEGEHVADNAEDTGAHRKLSSIRSFQQQHIGRTNAKFRNSCHNYDAITEKPKSSGCQIADDDLLVSAILKKTGFISKTTQGESKSKFCKSRAQRKLKRQKGHCRLLPRNLGNEGKRIREGKRCYIGTRTVLSWLIENGIISINDVIQYRNLKDNAVIKDGRITRDGIICKCCKKLLTLSEFKFHAGYRLNRPCLNLFMESGEPLTLCLLQAWSAEYKARKSGNQTVKANDDDKNDDSCGLCGDGGELICCDNCPSAFHLACLSTQDIPEGDWYCTNCTCHICENFVDDKEAPGDRDALQCLQCEHKYHEKCLSGGSKPEGEVSDGWFCSGRCQEVYSGLQSRVGLVNHIDGGLSWMLLRCIQDDQKVHSAQWFAVKALCNTKLTVALTIMEECFLSMVDPRTGIDMIPHVLYNRGSDFARLNFQGFYTVVLEKKDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVSAVEEVAKLVIAAIPDLVGTWTKGFGFKPVGEDEKQKLNKIKLMVFPGTVLLEKPLFSEDETEDDFSKVGAYCKEMAMAESLQQDVGAKSDSEHGCSKNGTDYRIESLLQDVENNYTDELSTKSEREHDCSNNFPDYRAESSLGLKETADRNTYLSGEKIMGFVNNNMQELRLSSKMESSTNESVQHSSGNCCTNKDDTESEVVRIMENRNIKVGEGQENGLQGPFLQMSCKAVIGNHFDVDNIIESSGMYDETRLSLEQNLQEACEMMNE 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0704 1471 MobiDBLite consensus disorder prediction 598 616 - -
Lele12g0704 1471 CDD PHD1_AIRE 966 1005 - -
Lele12g0704 1471 SUPERFAMILY FYVE/PHD zinc finger 957 1012 IPR011011 -
Lele12g0704 1471 Pfam Tify domain binding domain 888 938 IPR032308 -
Lele12g0704 1471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 950 1020 IPR013083 -
Lele12g0704 1471 SMART PHD_3 965 1006 IPR001965 -
Lele12g0704 1471 SMART PHD_3 1007 1061 IPR001965 -
Lele12g0704 1471 ProSiteProfiles Zinc finger PHD-type profile. 963 1008 IPR019787 -
Lele12g0704 1471 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1152 1233 IPR016181 -
Lele12g0704 1471 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1113 1257 IPR000182 GO:0016747
Lele12g0704 1471 PANTHER PHD FINGER FAMILY PROTEIN 1 1400 - -
Lele12g0704 1471 Pfam PHD-finger 966 1007 IPR019787 -
Lele12g0704 1471 MobiDBLite consensus disorder prediction 598 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0704 Lele-ChrLele12 15209786 15216447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0704 1 412 PHD Transcription Factor Family AT3G14980 34.615 1.50e-47 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele12g0704 TDBD 7.3e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0618 09 4722019 4730010 Lele12g0704 12 15209786 15216447 hybridization
Lele10g0571 10 4181863 4188473 Lele12g0704 12 15209786 15216447 hybridization