Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0697 ATGATTAGCGGTGGATTATGCAGTCTTCGAATGTGTTGCTTGCATCTCTCCTGCTTCTCAGAGAAATCTCTGCTCCCACCAGCTCGGTTATCTTTCACTTGCCGCCGCCGCCTCTTGGCCACTGCATCCTCGGTTTCCGGCGCAAATAAGAAGGAATCTAAAGAGAAAGTCATCATCATTTCTGGCCCCACTGGGTCTGGTAAAAGCCGGCTTGCTTTAGAGCTCGCGAAGCGCCTCAATGGTGAAATTATCAGTGCAGATTCTGTCCAGGTATACCAGGGTCTTGATGTTGGATCAGCAAAGCCCTCCAAAAATGATAGAAAGGAGGTTCCGCATCATCTGGTTGATATATTGCACCCATCTGAAGATTATTCTGTTGGGCAATTTTTTGAGGATGCAAGGGAAGCTACAAGAAACATTCTTGACAATGGTCATGTTCCTATTGTTGTTGGGGGAACTGGATTGTACTTAAGATGGTTCATTTATGGAAAGCCTGATGTCCCCAAGGCCTCTATAGAGACTACATCTGAAGTGTATTCGGAGTTAGCTGAATTCCAGAGAAATGAGCAATGGGATGCAGCTGTGCAGTTGGTTGTAGAAGCAGGTGACCCAAAGGCCCAATTTATAACTCCCAATGATTGGTATCGACTGCGACGTAGCCTTGAGATTATTAAGTCTAGTGGATCCCCTCCGTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGGAGATTCTAGTGTTATGGACAACTCTAACTATTCTGATGTCAATGCTATTTCCGGTGGAATGAAAGAAACATCCTCAGATTTGGACTATGAATTCATTTGTTTTTTCCTTTCTACACGAAGGCTTGGTCTCTATAGTTCAATTGATTATCGCTGCGAAGATATGCTATTAGAGAGGGATGGGCTGTTGTCTGAGGCTCAATGGCTTCTTAATATTGGTCTTCATCCTAATTCAAATTCTGCAACAAAAGCAATTGGTTACAGGCAGGCCATGGACTACTTAGTAAGATGCAGACTGCAAGGGGGTCAGAGTTCAGTTAGAGAATTCTTCCATTTTTTAAATGAGTTTCAAAAGGCATCTAGGAAATTTGCCAAAAGACAATTGACATGGTTTCGAAATGAACATATATACCACTGGCTTGATGCTTCTAAACCTCTGGACACCATTCTAGACTTTATCGATAGATCTTACCATGATCACAGTGGAGCTCTCATTGTTCCTGAACACTTGAGAATGTCTAGAGATGCTTCTAACGGTCGAGAAGCCAATCAACTAAAGGCTTACCGAAGCAAAAATAGGCTTTTCTTGAATAAAGATGATTGCTCTCCTGTTCTCGACTGGATAAGAAGAACTCAATGCTGA 1374 0.4294 MISGGLCSLRMCCLHLSCFSEKSLLPPARLSFTCRRRLLATASSVSGANKKESKEKVIIISGPTGSGKSRLALELAKRLNGEIISADSVQVYQGLDVGSAKPSKNDRKEVPHHLVDILHPSEDYSVGQFFEDAREATRNILDNGHVPIVVGGTGLYLRWFIYGKPDVPKASIETTSEVYSELAEFQRNEQWDAAVQLVVEAGDPKAQFITPNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQGDSSVMDNSNYSDVNAISGGMKETSSDLDYEFICFFLSTRRLGLYSSIDYRCEDMLLERDGLLSEAQWLLNIGLHPNSNSATKAIGYRQAMDYLVRCRLQGGQSSVREFFHFLNEFQKASRKFAKRQLTWFRNEHIYHWLDASKPLDTILDFIDRSYHDHSGALIVPEHLRMSRDASNGREANQLKAYRSKNRLFLNKDDCSPVLDWIRRTQC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0697 457 TIGRFAM miaA: tRNA dimethylallyltransferase 57 234 IPR018022 GO:0008033
Lele12g0697 457 Hamap tRNA dimethylallyltransferase [miaA]. 57 395 IPR018022 GO:0008033
Lele12g0697 457 Pfam IPP transferase 90 378 - -
Lele12g0697 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 185 IPR027417 -
Lele12g0697 457 FunFam tRNA dimethylallyltransferase 9 165 236 - -
Lele12g0697 457 Gene3D - 54 444 IPR027417 -
Lele12g0697 457 Gene3D - 166 236 - -
Lele12g0697 457 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 54 386 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0697 Lele-ChrLele12 15174910 15180437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0697 60 338 C2H2 Transcription Factor Family AT2G27760 28.472 8.13e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0697 12 15174910 15180437 Lele12g0697 12 15174910 15180437 ECH
Lele09g0624 09 4762662 4764807 Lele12g0697 12 15174910 15180437 hybridization
Lele10g0577 10 4215285 4226751 Lele12g0697 12 15174910 15180437 hybridization