Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0687 ATGACTGATTTGGAAATGGATCGATGGAGGCAAGACTATTATCATTCTGAACCCTGTATTATGCTGAGGGCCCCCAACATCTCACAGCCAAATATCCACACAATGGTGGCAGCTTCAGGCAACACTGGTAACATCGATTCCCACTACTCACTAGACGCTTATGACAATGGTTTGATGTATGGGACGACACAGTTTAATGGGATTCATCATCAACCCAATCTCGAGGGGGGTGTTGCTGCATCATCTAGCTTGTTTTTTTCTGCCTCTGGTGCTGGTGTAGTACCTCAGCCAATTAATTACCAAGCATCTGATCAATTGCCAGCCCCAGGCGTTTATGCTGTCTCTGGAATTTGCATGGATGATGCAAGATGTCCATACAAACAAAAAATGACCGAGGGCATCAGAGGAAATTACCAACATTTTAATGCTGCCGCTAGTTCTTCAGTAGCTCCTCCAAATGTAAGGCACCCTGATGGGGTTACGGCATCATTTTCTTTGCCTCAATTTAGAGGGAATCACCTTCCATCACCTGTAGAGATTGGACATCATGGTAGTTTGTGGAGCAGACGTGGTGACTCAGTTATGGTGCATGAACACAACCATTTTATTCAAGGAAACTATTTGGGCCAGCATTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAATGGTACGAACAGTGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATGCCTTATATGCCAGAAGCTGTTAATGGAAGTTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCATGATACAGCTTGCAACAGAAGCAGCCTCAGGTTTGCTCATTCTCCTCCCGTTAACCACCAGCGCCATAATTATCACCTTCCAACTATGCCTATGCAAGGAGTAAGAGGCCACAATATCAACTTTCACCCTCCAGTTACTGCAACTACTTATAGAGGGGTTCCGTCAAATTCTCCACACGTTAGCGTTATCCCAGTGCAGAATGGTTTTGGGTTGGGTGCTAGCCATGTCGGCCCTGCACCATCAGGAAGCCAACGGGTACATCGTTCTCATAGAGGAGTCATGCCTGATACATCTCTTAGACATCACAATTCCCGTCCAATGAGTTTTCTCCACGTTGGTGAGCTTCTTGCTTTGGGCGAGCGGATTGGCAGCGTGAACATGGGTTTGTCGGAGGAAACTATCACAACTCAATTGAAAACAAAAACTTTCGAGTCCTCCGCCACCGCTAATCTGGAGGAGGTAGCTTCTGAGGATGAGGAAACTGATTCTTGCATCATATGCCTGGACAAATATAAGAACCAAGAGACAGTTGGAATTCTCGAATGCGGGCACGATTATCACGCCGATTGCTTGAAGAAATGGTTGCTGCTGAAGAACGTCTGCCCTATATGCAAATCAGAGGCATTGCCCCCTAGAAGGAAGGACGTGTAA 1446 0.4606 MTDLEMDRWRQDYYHSEPCIMLRAPNISQPNIHTMVAASGNTGNIDSHYSLDAYDNGLMYGTTQFNGIHHQPNLEGGVAASSSLFFSASGAGVVPQPINYQASDQLPAPGVYAVSGICMDDARCPYKQKMTEGIRGNYQHFNAAASSSVAPPNVRHPDGVTASFSLPQFRGNHLPSPVEIGHHGSLWSRRGDSVMVHEHNHFIQGNYLGQHFQPAPPPWLDQQLNGTNSEGHNMAWNQSHSMPYMPEAVNGSSLENANTGMQRYHDTACNRSSLRFAHSPPVNHQRHNYHLPTMPMQGVRGHNINFHPPVTATTYRGVPSNSPHVSVIPVQNGFGLGASHVGPAPSGSQRVHRSHRGVMPDTSLRHHNSRPMSFLHVGELLALGERIGSVNMGLSEETITTQLKTKTFESSATANLEEVASEDEETDSCIICLDKYKNQETVGILECGHDYHADCLKKWLLLKNVCPICKSEALPPRRKDV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0687 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 123 474 IPR045191 GO:0061630
Lele12g0687 481 Pfam Ring finger domain 427 470 IPR001841 -
Lele12g0687 481 SMART ring_2 429 469 IPR001841 -
Lele12g0687 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 475 IPR013083 -
Lele12g0687 481 SUPERFAMILY RING/U-box 423 476 - -
Lele12g0687 481 ProSiteProfiles Zinc finger RING-type profile. 429 470 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0687 Lele-ChrLele12 15095101 15097661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0687 359 474 C3H Transcription Factor Family AT2G15530 42.735 1.13e-24 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0687 12 15095101 15097661 Lele12g0687 12 15095101 15097661 ECH
Lele09g0636 09 4857208 4866045 Lele12g0687 12 15095101 15097661 hybridization
Lele10g0584 10 4304661 4306559 Lele12g0687 12 15095101 15097661 hybridization