Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0649 ATGAGGTCCAGATGGAGGCGTTGCCGGCGAAGGTTTGTAAGGTTTGTCCGGCGATCTGCGGTTTCTCCGGCCAATGCTGAACCCAGCCACTTCTTCAAGATGATACTTCCAGGAATCGTTCCTGCCCAAAACATGAGAATTCCAAAGGAGTTCGTGAGAAGATTTGAGAATGAACTGTGTACTAGTGAAGCAACGATTGGTGTTCCAGATGGTCGTGTTTGGAAGATGGAACTGAAGAAATTTGAAAACGAAGCTTGGTTCTGCAAGGGTTGGGAGGAATTTATGAAATACTACTCTATTAGTTTTGGCTTCTTTTTGCGGTTCAAATATGAAGGCAATTCAAAATTCAGTGTGGTGATCTTTGATGCGAGTGCTGCTGAGATTTATTATCCATGCAAAATTAACTCTGAGAAGCAGAACTCTGTATCTGATCTATGTGGCCACAACACAAGAAGGAGCCAAAGGCGTAAGGTGGCAGATGAAGAAGAAATAATCGAAATAGAAGATGAGAGTAATGCATTAAGCCATGGTAAATCAGGAAACAAAGAAAGGTCTGGGGAAGAAATTGATAATTCAAGTAAGCATGAGAAAGAGAAAGAAAGATCTGGGCAAGTGCAAGGGCGTAGTTCCAAGATGAAGAAGAGAACTCTGAGTAAAAATCAAAGAGCTTTGGAAGCTGCCCAGAATTTCAAACCAGAGAATGCCTTTACTGCAATAATAAGGCCAGCTAATCTGAATCATCGTTATCTGGATGTGCCAGCTTCATTTCGGAAGGCTTATATGTGGAAAATGCGTCCTATGAAGCTGCAGGATTGTGAAGGACGAGAATGGGAGGTGAATTATGGTAGACACTTGTCAGGTATCCGAATACGGAAGGGTTGGATCAGTTTCGCCAGGGCCAATAATGTGAAGGAAGGAGACGTGTGTGCGTTTGAGCTTATCAAGAGGAAAAAGAACTTAGTATTTCAAGTTACCATCTTTCCCTGTTGA 990 0.4253 MRSRWRRCRRRFVRFVRRSAVSPANAEPSHFFKMILPGIVPAQNMRIPKEFVRRFENELCTSEATIGVPDGRVWKMELKKFENEAWFCKGWEEFMKYYSISFGFFLRFKYEGNSKFSVVIFDASAAEIYYPCKINSEKQNSVSDLCGHNTRRSQRRKVADEEEIIEIEDESNALSHGKSGNKERSGEEIDNSSKHEKEKERSGQVQGRSSKMKKRTLSKNQRALEAAQNFKPENAFTAIIRPANLNHRYLDVPASFRKAYMWKMRPMKLQDCEGREWEVNYGRHLSGIRIRKGWISFARANNVKEGDVCAFELIKRKKNLVFQVTIFPC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0649 329 PANTHER B3 DOMAIN-CONTAINING 27 322 - -
Lele12g0649 329 Pfam B3 DNA binding domain 237 324 IPR003340 GO:0003677
Lele12g0649 329 Pfam B3 DNA binding domain 43 123 IPR003340 GO:0003677
Lele12g0649 329 SUPERFAMILY DNA-binding pseudobarrel domain 26 124 IPR015300 -
Lele12g0649 329 Gene3D - 22 125 IPR015300 -
Lele12g0649 329 ProSiteProfiles B3 DNA-binding domain profile. 235 329 IPR003340 GO:0003677
Lele12g0649 329 CDD B3_DNA 30 122 IPR003340 GO:0003677
Lele12g0649 329 SMART B3_2 31 124 IPR003340 GO:0003677
Lele12g0649 329 SMART B3_2 236 328 IPR003340 GO:0003677
Lele12g0649 329 MobiDBLite consensus disorder prediction 143 162 - -
Lele12g0649 329 CDD B3_DNA 236 328 IPR003340 GO:0003677
Lele12g0649 329 Gene3D - 215 329 IPR015300 -
Lele12g0649 329 ProSiteProfiles B3 DNA-binding domain profile. 30 124 IPR003340 GO:0003677
Lele12g0649 329 MobiDBLite consensus disorder prediction 169 207 - -
Lele12g0649 329 MobiDBLite consensus disorder prediction 169 219 - -
Lele12g0649 329 SUPERFAMILY DNA-binding pseudobarrel domain 235 327 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0649 Lele-ChrLele12 14815701 14817402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0649 31 327 B3 DNA Binding Superfamily AT3G18990 30.294 1.38e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele12g0649 B3 9e-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0678 09 5138805 5142295 Lele12g0649 12 14815701 14817402 hybridization
Lele10g0618 10 4566759 4568451 Lele12g0649 12 14815701 14817402 hybridization