Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0617 ATGAACGAGAAGGCTAACGTGTCTAAGGAGCTCAACGCCAAGCATAAAAAGATACTGGAAGGACTTCTTAAATTACCAGAAAATAGGGAGTGTGCTGACTGCAAAGCTAAAGGACCGAGATGGGCTAGTGTGAATCTAGGCATCTTCATATGCATGCAGTGCTCAGGAATACATCGAAGTCTAGGAGTACATATATCAAAGGTGCGTTCTGCTACTTTGGACACTTGGCTACCAGAGCAGGTTGCCTTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTACTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGCGCCAAATATGAAGATAAGAGGTGGGCGGCAAAGGATGGGAAACCAAAATCACCTTCCAGTGTGCAGGTAGATAAGGCTTCTTCACATTTGCAGAGGCCTGCTGAAAGATGTGGGCACGGCACTCATGCATCTGGTTCTGAGAATACTTTTGAGGAAAAGAAGAAAATTCAACCATCAAATACAATTCCTGCTGTTAAATTTAGTGTTTCCGCTCCCCCAAAAGGACCTCAGCTGGCAATACCTGTCATAAAACCTCAGAATGTTGAGAAAGTGGAAGCGGTGGCACCACAACCTCAAGCTGAGACAACAAAGCCAGCCACTGATATGCCTCAGAGTACCCTTGCAAAAGTTGACTTTGCTACTGATCTGTTTGACATGTTATCTATGGATGGCCCAAGTGAAAATAATTCAGACACTGCTGCTGCTGCTACAGCTACAGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCTACAGAGGCATCAACAGCAGAGAAGACTAGTCCCACAAAGGCAGTTGAGAGTACTCCGTCTGCCTCCGGAATTGAGGATCTATTTAAAGATTCATCTTCACCTTCGGTGACACCAAGCTTAATTCCTGAAAAACCACAGAAAGATTTAAAAAATGATATAATGAGCCTCTTTGAGAAGTCCAACATGATGTCTCCATTTGCAATGCATCAACAACAACTTGCCATGCTGGCACAGCAACAGTCCCTTCTAATGGCCGCCGCAGCTAAATCTGATGGTGGGGACCCCAAGAATCCCAGTAGTTTACAACAATCTGGACTGAACGGGTCCAATATTGCTGTACAAAGTTGGTCAGGTGTTGGCTACCCAATCCCTGGAGCTGTGCCAATGCCTGGTCAGGCAGAGCTATTGAAACTCATGCAGACTGGGAACATGACTCCAGCACAATCTGCCGGAAGCGCTGTTCAATATCCATCTGGTTTCTACATGATGGGACAAGGTGCTCCGGTTAATGGTACTACGGCCACAACTGGAGGGAGTAAACCTCAGGCAGGAGCTCCGGCATCATTAACCCCTTCACAGTCATCGGGAAAGGACTGTGATTTTTCCTCTTTAACACAAGGGATGTTTACGAAACGCTGA 1458 0.4547 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWAAKDGKPKSPSSVQVDKASSHLQRPAERCGHGTHASGSENTFEEKKKIQPSNTIPAVKFSVSAPPKGPQLAIPVIKPQNVEKVEAVAPQPQAETTKPATDMPQSTLAKVDFATDLFDMLSMDGPSENNSDTAAAATATADDNNWAGFQSAATEASTAEKTSPTKAVESTPSASGIEDLFKDSSSPSVTPSLIPEKPQKDLKNDIMSLFEKSNMMSPFAMHQQQLAMLAQQQSLLMAAAAKSDGGDPKNPSSLQQSGLNGSNIAVQSWSGVGYPIPGAVPMPGQAELLKLMQTGNMTPAQSAGSAVQYPSGFYMMGQGAPVNGTTATTGGSKPQAGAPASLTPSQSSGKDCDFSSLTQGMFTKR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0617 485 MobiDBLite consensus disorder prediction 273 321 - -
Lele12g0617 485 MobiDBLite consensus disorder prediction 122 171 - -
Lele12g0617 485 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lele12g0617 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lele12g0617 485 MobiDBLite consensus disorder prediction 273 313 - -
Lele12g0617 485 CDD ArfGap 19 117 - -
Lele12g0617 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 485 IPR044520 GO:0005096
Lele12g0617 485 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lele12g0617 485 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lele12g0617 485 MobiDBLite consensus disorder prediction 443 485 - -
Lele12g0617 485 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Lele12g0617 485 MobiDBLite consensus disorder prediction 206 225 - -
Lele12g0617 485 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lele12g0617 485 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lele12g0617 485 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lele12g0617 485 MobiDBLite consensus disorder prediction 359 379 - -
Lele12g0617 485 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0617 Lele-ChrLele12 14575136 14580549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0617 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 6.54e-30 117