LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele12g0575	ATGAAGGACGAATCAACGGGACTGATCATTGGGATTTCAATTGGTGTAGTTATTGGTGTCATTTTGGCTATTTCTGCACTTTTCTGTGTGAGATACCATAGGAAGCGATCGCAGATTGGGAATAGCAGTTCAAGGCGGGCGGCTACGATACCTATCCGTACAAATGGTGCTGATTCTTGTACCATTTTATCGGATTCAACCTTAGGCCCAGAATCTCCTGTTAAGTCATCAAGTAGCGCTATGTCCTTCTCCTGGTTTGATGGCTTCAAGAGAAACAGCGTGGTTTCAGCTTCTGGAATACCTGAGTATCCTTACAAGGATTTGCAGAAGGCGACTGGGAACTTTACAACACTTATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCCACCGGTGAGACCATTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGAGAGAGAGAATTTCACACAGAGGTAATGTTGTTGGGAAGGCTGCACCATAGAAACCTGGTTAATTTGGTGGGATATTGCGCAGAGAAGGGACAACATATGCTTATATATGTATATATGAGCAAAGGCAGCTTGGCTTCCCACTTGTACAGTAAGGAGAAAGGAACAATGAGCTGGGATTTGAGAGTTCATATTGCTCTAGATATAGCGAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCAGTAATCCACAGAGATATCAAGTCATCTAACATTTTGCTAGACCAGTCCATGAGAGCTAGGGTAGCTGATTTTGGACTGTCAAGAGAAGAGAAGGTGGACAAGCATGCAGCCATAAGAGGCACCTTTGGTTATCTAGACCCAGAGTACATATCCTCAGGAACATTCACCAAGAAAAGTGATGTGTACAGCTATGGAGTGTTGCTTTTTGAACTCATAGCAGCCAGAAATCCTCAACAAGGTCTCATGGAGTTAGTTGAGCTAGCGGCGATGAACAGTGGGGGGAAAATGGGGTGGGAGGAGATAGTGGATTCTGCATTAGAAGGTGAATATGATGGAGAGGAGCTGAATGAAGTAGCAGGGCTCGCATACAAGTGCATAAACAGAGCCCCAAGAAAAAGACCTTCCATGAGAGACGTGGTTCAAGTGCTCACAAGGATTCTTAAAACAAGAAACGGTAAAAACCGTCACAGGAAGGGATTGTCTGCTACAGCAGATGAAGTTTCCATTGATGTGGATCACCCTGAAGCAACTATTCATCGCAGACAAGAATCTATGGATAGTGCAGCTGACACCTATGAAGTGTAG	1281	0.4426	MKDESTGLIIGISIGVVIGVILAISALFCVRYHRKRSQIGNSSSRRAATIPIRTNGADSCTILSDSTLGPESPVKSSSSAMSFSWFDGFKRNSVVSASGIPEYPYKDLQKATGNFTTLIGQGAFGPVYKAQMSTGETIAVKVLATNSKQGEREFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGSLASHLYSKEKGTMSWDLRVHIALDIARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEKVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSYGVLLFELIAARNPQQGLMELVELAAMNSGGKMGWEEIVDSALEGEYDGEELNEVAGLAYKCINRAPRKRPSMRDVVQVLTRILKTRNGKNRHRKGLSATADEVSIDVDHPEATIHRRQESMDSAADTYEV	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele12g0575	426	SMART	serkin_6	113	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0575	426	PANTHER	OS01G0750732 PROTEIN	5	383	-	-
	Lele12g0575	426	MobiDBLite	consensus disorder prediction	390	420	-	-
	Lele12g0575	426	ProSiteProfiles	Protein kinase domain profile.	113	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele12g0575	426	Pfam	Protein tyrosine and serine/threonine kinase	116	375	IPR001245	GO:0004672\|GO:0006468
	Lele12g0575	426	Gene3D	Transferase(Phosphotransferase) domain 1	189	401	-	-
	Lele12g0575	426	SUPERFAMILY	Protein kinase-like (PK-like)	101	381	IPR011009	-
	Lele12g0575	426	CDD	STKc_IRAK	119	378	-	-
	Lele12g0575	426	Gene3D	Phosphorylase Kinase; domain 1	83	188	-	-
	Lele12g0575	426	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	233	245	IPR008271	GO:0004672\|GO:0006468
	Lele12g0575	426	MobiDBLite	consensus disorder prediction	384	426	-	-
	Lele12g0575	426	FunFam	Calcium/calmodulin-regulated receptor-like kinase 1	87	188	-	-
	Lele12g0575	426	FunFam	calcium/calmodulin-regulated receptor-like kinase 1	189	397	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele12g0575	Lele-ChrLele12	14186544	14189134	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele12g0575	99	375	Receptor kinase-like Gene Family	AT3G19300	44.523	1.11e-73	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-2	Lele12g0575		PK_Tyr_Ser-Thr	9.2e-52	CL0016