Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0568 ATGGTTGGCCCGGAAAACCCCAATTGGCTTTTCGATTATGGTTTAATTGACGATATAACTGTCCCGGATGAGAGCTTTACTATACCTGCTTCTGGGTTCAGCTGGCCGGCGGCGCAGGCCTTGAATGGTGGTTCTTCGAATGTCAGTGCTGAAATTGATGGCACGTTGGGGGATACTGATGGCGTAAAAGAGCCTGTTTCAAAGAAGAGGGGTAGACCTGAATCATGTGCTGCTTCTAGTTCAAAGGCATGTCGGGAAAAGCTGAGGAGGGACAAGCTGAATGACAAGTTTATTGAATTAGGCTCTATTTTGGAGCCTGGAAGGCCTTCCAAAACGGACAAGGCTGCTATTCTAGTTGATGCTGTTCGACTGGTGACACAATTACGGGGTGAAGCTGAGAAGTTGAAAGACTCAAATGTGAATCTTCAAGAGAAGATTAAAGAGTTAAAGGCAGAGAAGAACGAACTACGAGATGAGAAACAGATGCTCAAGGCTGAGAAAGAAAAGTTGGAGCAGCAGTTAAAAGCTATCAATGCTCAACCTGCTTTCATGCCTCCCCCTCCGGCAATCCCAGCTGCATTTGCTGCTCAAGGCCAAGCCCCTGGCAGCAAGTTGGTCCCTTTTATTGGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCTCCAGCTGCTGTGGATACTTCACAGGACCATGTGCTCCGTCCACCAGTTGCCTAG 717 0.477 MVGPENPNWLFDYGLIDDITVPDESFTIPASGFSWPAAQALNGGSSNVSAEIDGTLGDTDGVKEPVSKKRGRPESCAASSSKACREKLRRDKLNDKFIELGSILEPGRPSKTDKAAILVDAVRLVTQLRGEAEKLKDSNVNLQEKIKELKAEKNELRDEKQMLKAEKEKLEQQLKAINAQPAFMPPPPAIPAAFAAQGQAPGSKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0568 238 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Lele12g0568 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Lele12g0568 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 147 IPR036638 GO:0046983
Lele12g0568 238 SMART finulus 83 134 IPR011598 GO:0046983
Lele12g0568 238 Gene3D - 80 154 IPR036638 GO:0046983
Lele12g0568 238 CDD bHLH_AtILR3_like 82 157 - -
Lele12g0568 238 MobiDBLite consensus disorder prediction 54 83 - -
Lele12g0568 238 PANTHER BHLH TRANSCRIPTION FACTOR 5 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Lele12g0568 238 Coils Coil 125 180 - -
Lele12g0568 238 FunFam Transcription factor bHLH34 68 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0568 Lele-ChrLele12 14130726 14133158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0568 1 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 72.917 8.69e-118 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele12g0568 HLH 4.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0568 12 14130726 14133158 Lele12g0568 12 14130726 14133158 ECH
Lele09g0768 09 6034446 6036829 Lele12g0568 12 14130726 14133158 hybridization
Lele10g0697 10 5268032 5270469 Lele12g0568 12 14130726 14133158 hybridization