LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele12g0564	ATGGCTTCTGTTAAACAATCTTCTCTCTTGTTACTACCTCTCTTGCTAATTTCCTTCTTCGTTGAGAGGTCCTCCGCTGCCGGAATCGCCGTCTATTGGGGCCAAAACGCCAATGAAGGCCCCCTCTCTGACGCCTGCAACACCGGAAACTACCAATTTATTAACATAGGTTTCTTGGCCGTCTTTGGCAATGGCCAAACACCACAACTGAACCTCGCCGGCCACTGTGACGGCACTGCAAGCACCTGCGCCGGCGCAAGCAACGACATCAAAACTTGCCAATCCAAAGGCATCAAAGTGCTTCTCTCCCTCGGAGGTGGCTCCAGTGGCTACTCTCTTGACTCCGCCGACGAAGCCAATCAGCTTGCTACCTACCTCTGGAATAACTTCCTCGGAGGAAGTTCTGGCTCACGGCCCCTAGGCGACGCCGTTTTGGACGGCATCGACTTTGACATCGAGGCCGGTACTGACCAACAGTGGGACCAGCTAGCCAGAGCTCTGAAGGCGTTCAACCAGAACCTGATCCTGTCCGCAGCGCCGCAATGTCCATTCCCAGACGCTCGCTTGAGTAATGCGATCAACACTGGCTTGTTCAACTATGTCTGGGTTCAGTTCTATAACAATCCTACATGCATGTACACAAGTGGGAACACTAACGATCTTTTCAGTTCATGGAATCAATGGAACACTGTGAATGCTGGGCAGGTGTTCTTGGGGGTTCCGGCATCTCAGGCGGCAGCCCCAAGCGGCGGGTTTATTCCGGCGGACGTGATGAATTCTCAGGTTCTTCCGACGATCAAGCAGTCTCCTAAGTACGGCGGAGTTATGATCTGGGACAGGTTCAACGATCTCCAAAATAAATATAGTGAGGCCATTAAGGGCTTCCCACCCCAAACTTTCTCGGTCTGTGAAGGAGTTGATTCTAATGTTCTCATTGATAGTTTAGTTGAGGGTGAGAGAAAAATGGGAAAGCAAAGCATGTTTCGATATGCAGATGACGTGGACAAGTTGTTAATGTTGTTTGGGACGTTGGGAAGTTTTGGAGATGGGATTCAAACTCCTCTTATGATGTTCATTCTTAGCGACGTGATAAATGCATATGGAGACCCAAATGTCGTTTTGACAAAGCATGATGTAAATAAGTATGCTTTAAGGCTTTTCTATGCTGCAATTGGAGTTGGATTCTCAGCTTTTGTTGAAGGAATGTGTTGGGCAAGAACTGCAGAGAGACAGACTTCTAGAATGAGAGTGGAATACCTGAAATCAGTACTTCGACAAGAAGTCGGTTTCTTCGATACTCAGGCAGCAGGTTCTTCAACAACTTACCGAGTTGTCTCCCTCATTACAGCTGATGCCAACTCAATTCAAGATGCTTTAAGTGAAAAGATACCAAACTTACTGGCCAGCATGTCAACATTTCTATGCTGCCACATCTTTGCACTTGTGCTATCATGGAGGCTTACATTAGCAGCCATGCCACTCTCAGTCATGTTCATCGTTCCGGCACTCATATTTGGGAAGATCATGTTGGATATAGCAATGAAAATGATTGAATCTTACGGCGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAGTAAGAACTGTTTATTCATATGTGGGGGAGAATCAAACACTGAACAGATTCAGCAGTGCACTTGAGGAAACAATGAAATTGGGAATAAAGCAAGGTTTTGCCAAGGGACTGATGTTAGGAAGCCTTGGAGTTATATATATCGGTTGGGGTTTTCAGGCTTGGGTTGGAACTTTTCTGATCACTGAGAAAGGAGAACAAGGTGGCCATGTATTCGTAGCCGGCTTCAATGTTCTCATGGGAGGCCTGAGTGTCTTAAGTGCACTTCCCCATTTGACTGCGATCACAGAGGCAACCGCGGCTGTCACGCGTCTGTTTGAAATGATTGATAGGGTGCCAAGTATAGATTCTGAGGACAAAAAGGGAAAAGCTTTATCACATGTGAGAGGAGAAATTGAATTCCAAGACATCTACTTTTGTTACCCATCAAGGCCAGATACAGCAGTGTTACAAGGATTCAATCTTAGGATTCCAGCAGGCAAGAGAACAGGCCTTATTGGAGGTAGCGGTTCTGGCAAATCCACCATCATTGCATTGCTTGAGAGGTTTTATGATCCTATTGAGGGAGAAATACTCTTAGATGGTCACAAGATCAACAGACTTCAGTTAAAATGGTTGAGATCTCAACTTGGCCTTGTAAATCAAGAACCTGTTCTTTTTGCCACAACCATAAAAGATAACATACTGTTTGGAAAGGAAGGAGCCACCATGGAAAGCGTGATAACCGCAGCTAAAGCAGCAAACGCGCACGATTTCATTGTCAAGTTACCAGATGGATATGAAACTCAAGTTGGGCAGTTTGGGTTTCAACTGTCTGGTGGGCAAAAGCAAAGAATCGCCATAGCGAGAGCTTTACTTAGGGATCCAAAGGTTCTGCTGCTTGATGAAGCTACCAGTGCATTAGATGCACAATCTGAAAGAGTGGTACAAGCAGCAATTGATCAAGCTTCAAAAGGAAGAACAACAATCATTATTGCTCACCGTTTGTCCACGATACAATCTGTTCACATTATAGCAGTTCTTCAAGCAGGGAAAGTGATTGAATCAGGTACTCATAATGATCTCATGCAAATGAATAATGGACAAGGTGGGGAATATTCAAGGATGGTGAAGTTGCAGCAAGTAACAACAACACAAGATGAAGATTCCAGGAATTCTAATCTTCAAACCGAGGGAAGAAATCCTCACCACAAGAAGGGCATTCCACCAAGCCCGGCGAGTATCAGACCAAGCACACCTGGAACTCCAGTTTTATTTCCATTCAGTCAGCCATTTTCCATGGGGACACCTTATTCATACTCAGTTCAATATGATCCCGATGATGATAGTTATGAAGATAACTTCAAAAGATTGACATATCCAGCTCCTTCGCAGTGGCGTTTGCTAAAGATGAATGCACCTGAGTGGGGAAGAGCAATGCTGGGATGCTTGGGTGCAATAGGCTCAGGAGCTGTACAACCAGTAAATGCATTTTTTGTGGGAACACTTATCTCTGTCTATTTTGACAGTGAAACCTCAAATATCAAGTCCAAAACTAGAGGCTTGGCTCTTACTTTCCTAGGAATTGGTGTTTTTAACTTCCTTACGAGTATCCTTCAACACTATAGTTTCGCGGTTATGGGAGAAAGATTGACCAAAAGAATTCGAGAAAAGTTACTAGGAAAATTGTTGACTTTTGAGATAGGCTGGTTTGATGATGAAGAAAACACAAGTGCAGCCATTTGTTCAAGATTAGCCTCCGAAGCTAACATGGTTCGCTCTCTCGTTGGAGATCGTCTGTCGTTATTGTCCCAAGCAATTTTTGGATCTATCTTTGCTTATGCTCTTGCATTGGTGCTCACATGGAGGCTATCCCTTGTGATGATTGCAGTACAACCCTTAGTGGTTGCAAGCTTTTACTCAAGAAGTGTCTTGATGAAGTCCATGGCCGAAAAGGCGCGAAAAGCTCAAAAGGAAGGAAGCCAACTGGCAAGTGAATCGGTAATAAACCACAGAACCATAACAGCCTTCAGTTCTCAGAAAAGAATGTTGGCACTTTTCAAATCTACATTGGTAGGTCCTCAAAAGGAGAGCATTAGGCAGTCATGGATTTCAGGTTTCGGTCTTTTCAGCTCACAATTCTTTAACACTGCAGCAACATCTTTAGCTTATTGGTATGGTGGCAGGCTCTTGGTTGATGAGCTCATAGAACCAAAGCATCTTTTTCAAGCATTCTTCATCTTACTGTTCACTGCATACATCATTGCAGAAGCTGGAAGCATGACTTCTGACTTATCTAAAGGAAGCAACGCGGTTCGATCGGTGTTTGAAATCTTGGACAGAAAAAGTGAGATCGATCCCGAGACCACGTGGGCAGTAGACATAAAGAAGAAATTAAGAGGTAAAGTGGAACTTAAAAGTGTTTTCTTTGCATATCCAGCAAGACCAGAGCAGATGATTTTTAAGGGTCTATGTCTTAAAGTTGAGGCAGGAAGAACAGTAGCATTAGTGGGACAAAGTGGTTCTGGTAAATCAACTATTATTGGACTTATTGAAAGATTTTATGAACCATTGAAGGGGACAATATGCATAGAAGAACAAGACATTAAGTCCTACAACTTGAGAGTTTTAAGGTCACATATTGCACTTGTAAGTCAGGAACCAACCCTTTTTGCTGGAACCATTAGAGAAAACATCGCCTATGGGAAAGAAAAAGCTTCTGAAGCTGAGATAAAAAAGGCTGCAACTTTGGCCAATGCCCATGAATTCATAAGTGGAATGAATGATGGGTATGACACGTATTGTGGAGAAAGAGGGGTTCAACTCTCAGGAGGGCAAAAACAAAGGATTGCATTAGCACGTGCGATATTGAAGAATCCTGCAATTTTGCTGTTGGACGAGGCAACAAGTGCACTTGATAGTGTATCAGAGAACTTGGTTCAAGAAGCATTGGAGAAGATGATGGTTGGAAGAACATGCATAGTTGTGGCTCATAGGTTATCTACCATACAGAAATCGAATTCAAGTGCTGTGATTAAGGATGGGAAAGTAGTGGAACAAGGTTCACATAATGAACTAATGTCTCTGGGAAGAGATGGAGCTTACTATTCTCTTGTTAAGCTTGCAAATGGCAGATCTTAA	4716	0.4377	MASVKQSSLLLLPLLLISFFVERSSAAGIAVYWGQNANEGPLSDACNTGNYQFINIGFLAVFGNGQTPQLNLAGHCDGTASTCAGASNDIKTCQSKGIKVLLSLGGGSSGYSLDSADEANQLATYLWNNFLGGSSGSRPLGDAVLDGIDFDIEAGTDQQWDQLARALKAFNQNLILSAAPQCPFPDARLSNAINTGLFNYVWVQFYNNPTCMYTSGNTNDLFSSWNQWNTVNAGQVFLGVPASQAAAPSGGFIPADVMNSQVLPTIKQSPKYGGVMIWDRFNDLQNKYSEAIKGFPPQTFSVCEGVDSNVLIDSLVEGERKMGKQSMFRYADDVDKLLMLFGTLGSFGDGIQTPLMMFILSDVINAYGDPNVVLTKHDVNKYALRLFYAAIGVGFSAFVEGMCWARTAERQTSRMRVEYLKSVLRQEVGFFDTQAAGSSTTYRVVSLITADANSIQDALSEKIPNLLASMSTFLCCHIFALVLSWRLTLAAMPLSVMFIVPALIFGKIMLDIAMKMIESYGVAGGIAEQAISSVRTVYSYVGENQTLNRFSSALEETMKLGIKQGFAKGLMLGSLGVIYIGWGFQAWVGTFLITEKGEQGGHVFVAGFNVLMGGLSVLSALPHLTAITEATAAVTRLFEMIDRVPSIDSEDKKGKALSHVRGEIEFQDIYFCYPSRPDTAVLQGFNLRIPAGKRTGLIGGSGSGKSTIIALLERFYDPIEGEILLDGHKINRLQLKWLRSQLGLVNQEPVLFATTIKDNILFGKEGATMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIQSVHIIAVLQAGKVIESGTHNDLMQMNNGQGGEYSRMVKLQQVTTTQDEDSRNSNLQTEGRNPHHKKGIPPSPASIRPSTPGTPVLFPFSQPFSMGTPYSYSVQYDPDDDSYEDNFKRLTYPAPSQWRLLKMNAPEWGRAMLGCLGAIGSGAVQPVNAFFVGTLISVYFDSETSNIKSKTRGLALTFLGIGVFNFLTSILQHYSFAVMGERLTKRIREKLLGKLLTFEIGWFDDEENTSAAICSRLASEANMVRSLVGDRLSLLSQAIFGSIFAYALALVLTWRLSLVMIAVQPLVVASFYSRSVLMKSMAEKARKAQKEGSQLASESVINHRTITAFSSQKRMLALFKSTLVGPQKESIRQSWISGFGLFSSQFFNTAATSLAYWYGGRLLVDELIEPKHLFQAFFILLFTAYIIAEAGSMTSDLSKGSNAVRSVFEILDRKSEIDPETTWAVDIKKKLRGKVELKSVFFAYPARPEQMIFKGLCLKVEAGRTVALVGQSGSGKSTIIGLIERFYEPLKGTICIEEQDIKSYNLRVLRSHIALVSQEPTLFAGTIRENIAYGKEKASEAEIKKAATLANAHEFISGMNDGYDTYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQKSNSSAVIKDGKVVEQGSHNELMSLGRDGAYYSLVKLANGRS	1571

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele12g0564	1571	Pfam	ABC transporter transmembrane region	340	614	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lele12g0564	1571	Pfam	ABC transporter transmembrane region	1006	1277	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lele12g0564	1571	MobiDBLite	consensus disorder prediction	906	945	-	-
Lele12g0564	1571	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	1328	1564	IPR003439	GO:0005524
Lele12g0564	1571	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	27	295	IPR001223	GO:0005975
Lele12g0564	1571	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	1323	1565	IPR027417	-
Lele12g0564	1571	CDD	GH18_hevamine_XipI_class_III	27	294	IPR045321	-
Lele12g0564	1571	SUPERFAMILY	ABC transporter transmembrane region	991	1311	IPR036640	GO:0005524\|GO:0016020
Lele12g0564	1571	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	664	900	IPR003439	GO:0005524
Lele12g0564	1571	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	655	905	IPR027417	-
Lele12g0564	1571	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	340	629	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lele12g0564	1571	CDD	ABC_6TM_Pgp_ABCB1_D2_like	994	1310	-	-
Lele12g0564	1571	ProSitePatterns	ABC transporters family signature.	803	817	IPR017871	GO:0005524\|GO:0016887
Lele12g0564	1571	FunFam	ABC transporter B family member 19	654	906	-	-
Lele12g0564	1571	Gene3D	ABC transporter type 1, transmembrane domain	326	912	IPR036640	GO:0005524\|GO:0016020
Lele12g0564	1571	FunFam	ABC transporter B family member 4	1318	1571	-	-
Lele12g0564	1571	SMART	AAA_5	1355	1548	IPR003593	-
Lele12g0564	1571	SMART	AAA_5	691	883	IPR003593	-
Lele12g0564	1571	Pfam	Glycosyl hydrolases family 18	29	283	IPR001223	GO:0005975
Lele12g0564	1571	ProSitePatterns	Glycosyl hydrolases family 18 (GH18) active site signature.	145	153	IPR001579	GO:0004553\|GO:0005975
Lele12g0564	1571	Pfam	ABC transporter	1347	1495	IPR003439	GO:0005524
Lele12g0564	1571	ProSitePatterns	ABC transporters family signature.	1467	1481	IPR017871	GO:0005524\|GO:0016887
Lele12g0564	1571	PANTHER	ABC TRANSPORTER B FAMILY	323	1017	-	-
Lele12g0564	1571	Pfam	ABC transporter	682	831	IPR003439	GO:0005524
Lele12g0564	1571	Gene3D	-	654	906	IPR027417	-
Lele12g0564	1571	Gene3D	-	1317	1567	IPR027417	-
Lele12g0564	1571	Gene3D	ABC transporter type 1, transmembrane domain	985	1233	IPR036640	GO:0005524\|GO:0016020
Lele12g0564	1571	Gene3D	ABC transporter type 1, transmembrane domain	1237	1316	IPR036640	GO:0005524\|GO:0016020
Lele12g0564	1571	CDD	ABC_6TM_Pgp_ABCB1_D1_like	339	637	-	-
Lele12g0564	1571	FunFam	Putative ABC transporter B family member 8	968	1315	-	-
Lele12g0564	1571	SUPERFAMILY	(Trans)glycosidases	25	291	IPR017853	-
Lele12g0564	1571	MobiDBLite	consensus disorder prediction	906	922	-	-
Lele12g0564	1571	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1006	1292	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
Lele12g0564	1571	CDD	ABC_MTABC3_MDL1_MDL2	664	905	-	-
Lele12g0564	1571	FunFam	Acidic endochitinase SE2	27	295	-	-
Lele12g0564	1571	CDD	ABC_MTABC3_MDL1_MDL2	1328	1567	-	-
Lele12g0564	1571	Gene3D	Glycosidases	28	295	-	-
Lele12g0564	1571	FunFam	ABC transporter B family member 15-like	327	664	-	-
Lele12g0564	1571	SUPERFAMILY	ABC transporter transmembrane region	327	648	IPR036640	GO:0005524\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele12g0564	Lele-ChrLele12	14077534	14087254	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele12g0564	296	1566	Calmodulin-binding Proteins	AT2G36910	42.510	0.0	999